Evidence map›Paper›PMID 27386510›Full record

ArticleScience advances2016

Saturation of recognition elements blocks evolution of new tRNA identities.

Adélaïde Saint-Léger, Carla Bello, Pablo D Dans, Adrian Gabriel Torres, Eva Maria Novoa, Noelia Camacho, Modesto Orozco, Fyodor A Kondrashov, Lluís Ribas de Pouplana

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  6. Article
  7. Article
  8. Review
  9. Evolution of the genetic code.Transcription · 2021
    Review
  10. Review
  11. Review
  12. Rational Design of Aptamer-Tagged tRNAs.International journal of molecular sciences · 2020
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. A tRNA-mimic Strategy to Explore the Role of G34 of tRNAInternational journal of molecular sciences · 2019
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Adélaïde Saint-LégerInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.
Carla BelloBioinformatics and Genomics Programme, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, 88 Dr. Aiguader, 08003 Barcelona, Catalonia, Spain.; Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.ORCID 0000-0002-3515-9025
Pablo D DansInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.; Joint BSC-IRB Research Program in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.ORCID 0000-0002-5927-372X
Adrian Gabriel TorresInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.
Eva Maria NovoaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, 32 Vassar Street, Cambridge, MA 02139, USA.; Broad Institute of MIT and Harvard, 415 Main Street, Cambridge, MA 02139, USA.ORCID 0000-0001-5567-1299
Noelia CamachoInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.
Modesto OrozcoInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.; Joint BSC-IRB Research Program in Computational Biology, Institute for Research in Biomedicine (IRB Barcelona), Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.; Departament de Bioquimica i Biologia Molecular, Facultat de Biologia, Universitat de Barcelona, Avgda Diagonal 647, 08028 Barcelona, Catalonia, Spain.ORCID 0000-0002-8608-3278
Fyodor A KondrashovBioinformatics and Genomics Programme, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, 88 Dr. Aiguader, 08003 Barcelona, Catalonia, Spain.; Universitat Pompeu Fabra, 08003 Barcelona, Catalonia, Spain.; Catalan Institution for Research and Advanced Studies (ICREA), Passeig Lluis Companys 23, 08010 Barcelona, Catalonia, Spain.
Lluís Ribas de PouplanaInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Baldiri Reixac 10, 08028 Barcelona, Catalonia, Spain.; Catalan Institution for Research and Advanced Studies (ICREA), Passeig Lluis Companys 23, 08010 Barcelona, Catalonia, Spain.
Institute for Research in Biomedicine · ESInstitució Catalana de Recerca i Estudis Avançats · ESBroad Institute · USUniversitat Pompeu Fabra · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the principles that led to the current complexity of the genetic code is a central question in evolution. Expansion of the genetic code required the selection of new transfer RNAs (tRNAs) with specific recognition signals that allowed them to be matured, modified, aminoacylated, and processed by the ribosome without compromising the fidelity or efficiency of protein synthesis. We show that saturation of recognition signals blocks the emergence of new tRNA identities and that the rate of nucleotide substitutions in tRNAs is higher in species with fewer tRNA genes. We propose that the growth of the genetic code stalled because a limit was reached in the number of identity elements that can be effectively used in the tRNA structure.

Indexed as

Evolution, MolecularGenetic CodeNucleic Acid ConformationRNA, TransferRNA, TransferADATevolutiongenetic codetRNA GlytRNA identities

Identifiers

PMID27386510
PMCPMC4928997
OpenAlexW2342484046

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.