Evidence map›Paper›PMID 27385823›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Cellular heterogeneity mediates inherent sensitivity-specificity tradeoff in cancer targeting by synthetic circuits.

Mathieu Morel, Roman Shtrahman, Varda Rotter, Lior Nissim, Roy H Bar-Ziv

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Mammalian synthetic biology for studying the cell.The Journal of cell biology · 2017
    Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mathieu MorelDepartment of Materials and Interfaces, Weizmann Institute of Science, Rehovot, Israel, 76100; Ecole Normale Supérieure, Paris Sciences et Lettres (PSL) Research University, Université Pierre et Marie Curie, CNRS, Département de Chimie, UMR 8640 PASTEUR, 75005 Paris, France; Université Pierre et Marie Curie Paris 06, École Normale Supérieure, CNRS, UMR 8640 PASTEUR, 75005 Paris, France;
Roman ShtrahmanDepartment of Materials and Interfaces, Weizmann Institute of Science, Rehovot, Israel, 76100;
Varda RotterDepartment of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel, 76100;
Lior NissimSynthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA 02139 liorni@mit.edu roy.bar-ziv@weizmann.ac.il.
Roy H Bar-ZivDepartment of Materials and Interfaces, Weizmann Institute of Science, Rehovot, Israel, 76100; liorni@mit.edu roy.bar-ziv@weizmann.ac.il.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Synthetic gene circuits are emerging as a versatile means to target cancer with enhanced specificity by combinatorial integration of multiple expression markers. Such circuits must also be tuned to be highly sensitive because escape of even a few cells might be detrimental. However, the error rates of decision-making circuits in light of cellular variability in gene expression have so far remained unexplored. Here, we measure the single-cell response function of a tunable logic AND gate acting on two promoters in heterogeneous cell populations. Our analysis reveals an inherent tradeoff between specificity and sensitivity that is controlled by the AND gate amplification gain and activation threshold. We implement a tumor-mimicking cell-culture model of cancer cells emerging in a background of normal ones, and show that molecular parameters of the synthetic circuits control specificity and sensitivity in a killing assay. This suggests that, beyond the inherent tradeoff, synthetic circuits operating in a heterogeneous environment could be optimized to efficiently target malignant state with minimal loss of specificity.

Indexed as

Gene Regulatory NetworksCell DeathCell LineCyclin D1FibroblastsHCT116 CellsHistonesHumansNeoplasm ProteinsNeoplasmsPromoter Regions, GeneticRepressor ProteinsSensitivity and SpecificitySynthetic BiologyCCND1 protein, humanCyclin D1HistonesNeoplasm ProteinsRepressor Proteinssynovial sarcoma X breakpoint proteinscancer gene therapycell-state targetingcellular heterogeneitymammalian synthetic biologysynthetic gene circuits

Identifiers

PMID27385823
PMCPMC4961148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.