Evidence map›Paper›PMID 27385075›Full record

ArticleACS chemical biology2016

A Genetically Encoded FRET Sensor for Hypoxia and Prolyl Hydroxylases.

Suzan Youssef, Wei Ren, Hui-Wang Ai

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Synthetic biology of hypoxia.The New phytologist · 2021
    Review
  4. Review
  5. Imaging of oxygen and hypoxia in cell and tissue samples.Cellular and molecular life sciences : CMLS · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Suzan YoussefDepartment of Chemistry, University of California , Riverside, 501 Big Springs Road, Riverside, California 92521, United States.
Wei RenDepartment of Chemistry, University of California , Riverside, 501 Big Springs Road, Riverside, California 92521, United States.
Hui-Wang AiDepartment of Chemistry, University of California , Riverside, 501 Big Springs Road, Riverside, California 92521, United States.
University of California, Riverside · US

Funding

A Fluorescent Toolkit for Imaging Reactive Oxygen Species (ROS)R01GM118675 · NIGMS · UNIVERSITY OF VIRGINIA · PI AI, HUIWANG · 2016 to 2019
$1.4M
Lentiviral Systems for Controlled Mammalian Expression of Unnatural Fluorescent Protein ProbesR03EB020211 · NIBIB · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI AI, HUIWANG · 2015 to 2016
$152k
NIBIB NIH HHS R03 EB020211NIGMS NIH HHS R01 GM118675
6 · The paper itself

Abstract

Oxygen is vital for all aerobic life forms. Oxygen-dependent hydroxylation of hypoxia-inducible factor (HIF)-1α by prolyl hydroxylase domain enzymes (PHDs) is an important step for controlling the expression of oxygen-regulated genes in metazoan species, thereby constituting a molecular mechanism for oxygen sensing and response. Herein, we report a genetically encoded dual-emission ratiometric fluorescent sensor, ProCY, which responds to PHD activities in vitro and in live cells. We demonstrated that ProCY could monitor hypoxia in mammalian cells. By targeting this novel genetically encoded biosensor to the cell nucleus and cytosol, we determined that, under normoxic conditions, the HIF-prolyl hydroxylase activity was mainly confined to the cytosol of HEK 293T cells. The results collectively suggest broad applications of ProCY on the evaluation of hypoxia and PHD activities and understanding of pathways for the control of hypoxic responses.

Indexed as

Fluorescence Resonance Energy TransferHEK293 CellsHumansHypoxiaProlyl HydroxylasesSubcellular FractionsProlyl Hydroxylases

Identifiers

PMID27385075
PMCPMC5026574
OpenAlexW2467234966

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.