Evidence map›Paper›PMID 27384942›Full record

ReviewAnnals of biomedical engineering2016

Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success.

Thomas E Yankeelov, Gary An, Oliver Saut, E Georg Luebeck, Aleksander S Popel, Benjamin Ribba, Paolo Vicini, Xiaobo Zhou, Jared A Weis, Kaiming Ye and 1 more

Abstract readReview
In one paragraph

Review in Annals of biomedical engineering, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Trial
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  14. Review
  15. Article
  16. Agent-Based Learning Model for the Obesity Paradox in RCC.Frontiers in bioengineering and biotechnology · 2021
    Article
  17. Review
  18. Multi-scale models of lung fibrosis.Matrix biology : journal of the International Society for Matrix Biology · 2020
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Thomas E YankeelovDepartments of Biomedical Engineering and Internal Medicine, Institute for Computational and Engineering Sciences, Cockrell School of Engineering, The University of Texas at Austin, 107 W. Dean Keeton, BME Building, 1 University Station, C0800, Austin, TX, 78712, USA. thomas.yankeelov@utexas.edu.
Gary AnDepartment of Surgery and Computation Institute, The University of Chicago, Chicago, IL, USA.
Oliver SautInstitut de Mathématiques de Bordeaux, Université de Bordeaux and INRIA, Bordeaux, France.
E Georg LuebeckProgram in Computational Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Aleksander S PopelDepartments of Biomedical Engineering and Oncology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Benjamin RibbaPharma Research and Early Development, Clinical Pharmacology, F. Hoffmann-La Roche Ltd, Basel, Switzerland.
Paolo ViciniClinical Pharmacology and DMPK, MedImmune, Gaithersburg, MD, USA.
Xiaobo ZhouCenter for Bioinformatics and Systems Biology, Radiology, Wake Forest University School of Medicine, Winston-Salem, NC, USA.
Jared A WeisDepartment of Biomedical Engineering, Vanderbilt University, Nashville, TN, USA.
Kaiming YeDepartment of Biomedical Engineering, Watson School of Engineering and Applied Science, Binghamton University, State University of New York, Binghamton, NY, USA.
Guy M GeninDepartments of Mechanical Engineering and Materials Science, and Neurological Surgery, Washington University in St. Louis, St. Louis, MO, USA.

Funding

ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1990 to 2025
$29.8M
Predictive experiment-based multiscale models of the tumor immune microenvironment and immunotherapy in breast cancerR01CA138264 · NCI · JOHNS HOPKINS UNIVERSITY · PI POPEL, ALEKSANDER S. · 2009 to 2023
$8.1M
Controlling Esophageal Cancer in the US.: A Colloraborative Modeling ProjectU01CA152926 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI HUR, CHIN, INADOMI, JOHN MATTHEW · 2010 to 2014
$3.9M
Esophageal Cancer from Cells to Population: A Multiscale ApproachU01CA182940 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HUR, CHIN, INADOMI, JOHN MATTHEW · 2013 to 2017
$3.3M
Image Driven Multi-Scale Modeling to Predict Treatment Response in Breast CancerU01CA174706 · NCI · VANDERBILT UNIVERSITY · PI QUARANTA, VITO, YANKEELOV, THOMAS E · 2013 to 2018
$2.5M
Cross-scale interactions between mineral and collagen for tendon-bone attachmentU01EB016422 · NIBIB · WASHINGTON UNIVERSITY · PI GENIN, GUY M, THOMOPOULOS, STAVROS · 2013 to 2017
$2.4M
Modelling the Growth of the MIC Niche at the System LevelU01CA166886 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI ZHOU, XIAOBO · 2012 to 2016
$2.2M
THE EFFECTS OF MYOFIBROBLASTS ON ELECTROMECHANICAL FUNCTION OF MODEL HEART TISSUER01HL109505 · NHLBI · WASHINGTON UNIVERSITY · PI ELSON, ELLIOT L., GENIN, GUY M · 2012 to 2015
$2.0M
Adaptive Simulation to Enable Anatomic-scale Agent-basedR01GM115839 · NIGMS · UNIVERSITY OF CHICAGO · PI AN, GARY, MACAL, CHARLES MARTIN · 2015 to 2017
$1.2M
NCI NIH HHS R01 CA138264NCI NIH HHS U01 CA152926NCI NIH HHS U01 CA166886NCI NIH HHS U01 CA174706NCI NIH HHS U01 CA182940NHLBI NIH HHS R01 HL109505NIBIB NIH HHS U01 EB016422NIDDK NIH HHS P30 DK042086NIGMS NIH HHS R01 GM115839
6 · The paper itself

Abstract

Hierarchical processes spanning several orders of magnitude of both space and time underlie nearly all cancers. Multi-scale statistical, mathematical, and computational modeling methods are central to designing, implementing and assessing treatment strategies that account for these hierarchies. The basic science underlying these modeling efforts is maturing into a new discipline that is close to influencing and facilitating clinical successes. The purpose of this review is to capture the state-of-the-art as well as the key barriers to success for multi-scale modeling in clinical oncology. We begin with a summary of the long-envisioned promise of multi-scale modeling in clinical oncology, including the synthesis of disparate data types into models that reveal underlying mechanisms and allow for experimental testing of hypotheses. We then evaluate the mathematical techniques employed most widely and present several examples illustrating their application as well as the current gap between pre-clinical and clinical applications. We conclude with a discussion of what we view to be the key challenges and opportunities for multi-scale modeling in clinical oncology.

Indexed as

Medical OncologyModels, BiologicalNeoplasmsHumansAgent-based modelingCancerCancer screeningComputational modelingEpidemiologyMathematical modelingNumerical modelingPredictive oncology

Identifiers

PMID27384942
PMCPMC4983505

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.