Evidence map›Paper›PMID 27384665›Full record

ArticleJournal of virology2016

Structure-Activity Relationships of the Human Immunodeficiency Virus Type 1 Maturation Inhibitor PF-46396.

Christopher Murgatroyd, Lisa Pirrie, Fanny Tran, Terry K Smith, Nicholas J Westwood, Catherine S Adamson

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Viral structural proteins as targets for antivirals.Current opinion in virology · 2020
    Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Christopher MurgatroydSchool of Medicine, University of St Andrews, St Andrews, Fife, United Kingdom Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife, United Kingdom.
Lisa PirrieSchool of Chemistry, University of St Andrews, St Andrews, Fife, United Kingdom Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife, United Kingdom.
Fanny TranSchool of Chemistry, University of St Andrews, St Andrews, Fife, United Kingdom Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife, United Kingdom.
Terry K SmithSchool of Chemistry, University of St Andrews, St Andrews, Fife, United Kingdom School of Biology, University of St Andrews, St Andrews, Fife, United Kingdom Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife, United Kingdom.
Nicholas J WestwoodSchool of Chemistry, University of St Andrews, St Andrews, Fife, United Kingdom Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife, United Kingdom njw3@st-andrews.ac.uk csa21@st-andrews.ac.uk.
Catherine S AdamsonSchool of Biology, University of St Andrews, St Andrews, Fife, United Kingdom Biomedical Sciences Research Complex, University of St Andrews, St Andrews, Fife, United Kingdom njw3@st-andrews.ac.uk csa21@st-andrews.ac.uk.
University of St Andrews · GB

Funding

Wellcome Trust 093228
6 · The paper itself

Abstract

unlabelledHIV-1 maturation inhibitors are a novel class of antiretroviral compounds that consist of two structurally distinct chemical classes: betulinic acid derivatives and the pyridone-based compound PF-46396. It is currently believed that both classes act by similar modes of action to generate aberrant noninfectious particles via inhibition of CA-SP1 cleavage during Gag proteolytic processing. In this study, we utilized a series of novel analogues with decreasing similarity to PF-46396 to determine the chemical groups within PF-46396 that contribute to antiviral activity, Gag binding, and the relationship between these essential properties. A spectrum of antiviral activity (active, intermediate, and inactive) was observed across the analogue series with respect to CA-SP1 cleavage and HIV-1 (NL4-3) replication kinetics in Jurkat T cells. We demonstrate that selected inactive analogues are incorporated into wild-type (WT) immature particles and that one inactive analogue is capable of interfering with PF-46396 inhibition of CA-SP1 cleavage. Mutations that confer PF-46396 resistance can impose a defective phenotype on HIV-1 that can be rescued in a compound-dependent manner. Some inactive analogues retained the capacity to rescue PF-46396-dependent mutants (SP1-A3V, SP1-A3T, and CA-P157S), implying that they can also interact with mutant Gag. The structure-activity relationships observed in this study demonstrate that (i) the tert-butyl group is essential for antiviral activity but is not an absolute requirement for Gag binding, (ii) the trifluoromethyl group is optimal but not essential for antiviral activity, and (iii) the 2-aminoindan group is important for antiviral activity and Gag binding but is not essential, as its replacement is tolerated. IMPORTANCE: Combinations of antiretroviral drugs successfully treat HIV/AIDS patients; however, drug resistance problems make the development of new mechanistic drug classes an ongoing priority. HIV-1 maturation inhibitors are novel as they target the Gag protein, specifically by inhibiting CA-SP1 proteolytic cleavage. The lack of high-resolution structural information of the CA-SP1 target in Gag has hindered our understanding of the inhibitor-binding pocket and maturation inhibitor mode of action. Therefore, we utilized analogues of the maturation inhibitor PF-46396 as chemical tools to determine the chemical components of PF-46396 that contribute to antiviral activity and Gag binding and the relationship between these essential properties. This is the first study to report structure-activity relationships of the maturation inhibitor PF-46396. PF-46396 is chemically distinct from betulinic acid-derived maturation inhibitors; therefore, our data provide a foundation of knowledge that will aid our understanding of how structurally distinct maturation inhibitors act by similar modes of action.

Indexed as

Anti-HIV AgentsDrug Resistance, Viralgag Gene Products, Human Immunodeficiency VirusHIV-1HumansJurkat CellsMolecular StructureMutationProtein BindingProtein Processing, Post-TranslationalProteolysisStructure-Activity RelationshipVirus ReplicationAnti-HIV Agentsgag Gene Products, Human Immunodeficiency Virus

Identifiers

PMID27384665
PMCPMC5008107
OpenAlexW2464102004

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.