Evidence map›Paper›PMID 27383905›Full record

ArticleScientific reports2016

Quantifying mammalian genomic DNA hydroxymethylcytosine content using solid-state nanopores.

Osama K Zahid, Boxuan Simen Zhao, Chuan He, Adam R Hall

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
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  6. TETology: Epigenetic Mastermind in Action.Applied biochemistry and biotechnology · 2021
    Review
  7. Article
  8. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Osama K ZahidVirginia Tech-Wake Forest University School of Biomedical Engineering and Sciences, Wake Forest University School of Medicine, Winston-Salem, NC 27101, USA.
Boxuan Simen ZhaoDepartment of Chemistry, Department of Biochemistry and Molecule Biology, Institute for Biophysical Dynamics, The University of Chicago, 929 East 57th Street, Chicago, Illinois 60637, USA.
Chuan HeDepartment of Chemistry, Department of Biochemistry and Molecule Biology, Institute for Biophysical Dynamics, The University of Chicago, 929 East 57th Street, Chicago, Illinois 60637, USA.
Adam R HallVirginia Tech-Wake Forest University School of Biomedical Engineering and Sciences, Wake Forest University School of Medicine, Winston-Salem, NC 27101, USA.

Funding

Tumor Tissue CoreP30CA012197 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI Ruben A. Mesa · 1985 to 2026
$55.4M
Molecular Detection of DNA Hydroxymethylation for Cancer ScreeningR21CA193067 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HALL, ADAM ROGER · 2015 to 2017
$649k
NCI NIH HHS P30 CA012197NCI NIH HHS R21 CA193067
6 · The paper itself

Abstract

5-hydroxymethylcytosine (5 hmC), the oxidized form of 5-methylcytosine (5 mC), is a base modification with emerging importance in biology and disease. However, like most epigenetic elements, it is transparent to many conventional genetic techniques and is thus challenging to probe. Here, we report a rapid solid-state nanopore assay that is capable of resolving 5 hmC with high specificity and sensitivity and demonstrate its utility in assessing global modification abundance in genomic DNA.

Indexed as

5-MethylcytosineAnimalsBiotinylationDNAEpigenesis, GeneticGenomicsMiceNanoporesOligonucleotidesReproducibility of ResultsSensitivity and SpecificityTandem Mass SpectrometryUltrasonics5-hydroxymethylcytosine5-MethylcytosineDNAOligonucleotides

Identifiers

PMID27383905
PMCPMC4935868

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.