Evidence map›Paper›PMID 27383050›Full record

ArticleeLife2016

Metabolic network rewiring of propionate flux compensates vitamin B12 deficiency in C. elegans.

Emma Watson, Viridiana Olin-Sandoval, Michael J Hoy, Chi-Hua Li, Timo Louisse, Victoria Yao, Akihiro Mori, Amy D Holdorf, Olga G Troyanskaya, Markus Ralser and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 134 citations in OpenAlex.

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  18. International journal of molecular sciences · 2024
    Review
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16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Emma WatsonProgram in Systems Biology, University of Massachusetts Medical School, Worcester, United States.
Viridiana Olin-SandovalDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Michael J HoyProgram in Systems Biology, University of Massachusetts Medical School, Worcester, United States.
Chi-Hua LiProgram in Systems Biology, University of Massachusetts Medical School, Worcester, United States.
Timo LouisseProgram in Systems Biology, University of Massachusetts Medical School, Worcester, United States.
Victoria YaoDepartment of Computer Science, Princeton University, Princeton, United States.ORCID 0000-0002-3201-9983
Akihiro MoriProgram in Systems Biology, University of Massachusetts Medical School, Worcester, United States.
Amy D HoldorfProgram in Systems Biology, University of Massachusetts Medical School, Worcester, United States.
Olga G TroyanskayaDepartment of Computer Science, Princeton University, Princeton, United States.
Markus RalserDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0001-9535-7413
Albertha Jm WalhoutProgram in Systems Biology, University of Massachusetts Medical School, Worcester, United States.ORCID 0000-0001-5587-3608
University of Massachusetts Chan Medical School · USPrinceton University · USUniversity of Cambridge · GB

Funding

Transcription networks in C elegans organogenesisR01DK068429 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI A. J. Marian Walhout · 2005 to 2026
$10.9M
Quantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
lntegration and Visualization of Diverse Biological DataR01GM071966 · NIGMS · PRINCETON UNIVERSITY · PI TROYANSKAYA, OLGA G · 2005 to 2022
$6.4M
Context-Sensitive Search of Human Expression CompendiaR01HG005998 · NHGRI · PRINCETON UNIVERSITY · PI TROYANSKAYA, OLGA G · 2011 to 2013
$1.1M
European Research Council 260809NHGRI NIH HHS R01 HG005998NHGRI NIH HHS T32 HG003284NIDDK NIH HHS R01 DK068429NIGMS NIH HHS R01 GM071966NIH HHS P40 OD010440Wellcome Trust 093735/Z/10/Z
6 · The paper itself

Abstract

Metabolic network rewiring is the rerouting of metabolism through the use of alternate enzymes to adjust pathway flux and accomplish specific anabolic or catabolic objectives. Here, we report the first characterization of two parallel pathways for the breakdown of the short chain fatty acid propionate in Caenorhabditis elegans. Using genetic interaction mapping, gene co-expression analysis, pathway intermediate quantification and carbon tracing, we uncover a vitamin B12-independent propionate breakdown shunt that is transcriptionally activated on vitamin B12 deficient diets, or under genetic conditions mimicking the human diseases propionic- and methylmalonic acidemia, in which the canonical B12-dependent propionate breakdown pathway is blocked. Our study presents the first example of transcriptional vitamin-directed metabolic network rewiring to promote survival under vitamin deficiency. The ability to reroute propionate breakdown according to B12 availability may provide C. elegans with metabolic plasticity and thus a selective advantage on different diets in the wild.

Indexed as

Metabolic EngineeringVitamin B 12 DeficiencyAnimalsCaenorhabditis elegansMetabolic Networks and PathwaysPropionatesPropionatesbacteriaC. eleganschromosomescomputational biologygeneshumanmetabolismnetwork rewiringpropionatesystems biologytranscriptionvitamin B12

Identifiers

PMID27383050
PMCPMC4951191
OpenAlexW2472391846

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.