Evidence map›Paper›PMID 27382138›Full record

ArticlePlant physiology2016

Suppressing Farnesyl Diphosphate Synthase Alters Chloroplast Development and Triggers Sterol-Dependent Induction of Jasmonate- and Fe-Related Responses.

David Manzano, Paola Andrade, Daniel Caudepón, Teresa Altabella, Montserrat Arró, Albert Ferrer

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  7. How plants synthesize coenzyme Q.Plant communications · 2022
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  8. Molecular Cloning and Functional Analysis ofFoods (Basel, Switzerland) · 2022
    Article
  9. Article
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  11. Article
  12. Review
  13. Functional Gene Network of Prenyltransferases inMolecules (Basel, Switzerland) · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

David ManzanoPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra (Cerdanyola del Vallès), Barcelona, Spain (D.M., P.A., D.C., T.A., M.A., A.F.); andDepartment of Biochemistry and Molecular Biology (D.M., P.A., D.C., M.A., A.F.) and Plant Physiology Unit (T.A.), Faculty of Pharmacy, University of Barcelona, Barcelona, Spain david.manzano@ub.edu.ORCID 0000-0002-5483-7223
Paola AndradePlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra (Cerdanyola del Vallès), Barcelona, Spain (D.M., P.A., D.C., T.A., M.A., A.F.); andDepartment of Biochemistry and Molecular Biology (D.M., P.A., D.C., M.A., A.F.) and Plant Physiology Unit (T.A.), Faculty of Pharmacy, University of Barcelona, Barcelona, Spain.
Daniel CaudepónPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra (Cerdanyola del Vallès), Barcelona, Spain (D.M., P.A., D.C., T.A., M.A., A.F.); andDepartment of Biochemistry and Molecular Biology (D.M., P.A., D.C., M.A., A.F.) and Plant Physiology Unit (T.A.), Faculty of Pharmacy, University of Barcelona, Barcelona, Spain.
Teresa AltabellaPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra (Cerdanyola del Vallès), Barcelona, Spain (D.M., P.A., D.C., T.A., M.A., A.F.); andDepartment of Biochemistry and Molecular Biology (D.M., P.A., D.C., M.A., A.F.) and Plant Physiology Unit (T.A.), Faculty of Pharmacy, University of Barcelona, Barcelona, Spain.ORCID 0000-0002-6915-5823
Montserrat ArróPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra (Cerdanyola del Vallès), Barcelona, Spain (D.M., P.A., D.C., T.A., M.A., A.F.); andDepartment of Biochemistry and Molecular Biology (D.M., P.A., D.C., M.A., A.F.) and Plant Physiology Unit (T.A.), Faculty of Pharmacy, University of Barcelona, Barcelona, Spain.
Albert FerrerPlant Metabolism and Metabolic Engineering Program, Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra (Cerdanyola del Vallès), Barcelona, Spain (D.M., P.A., D.C., T.A., M.A., A.F.); andDepartment of Biochemistry and Molecular Biology (D.M., P.A., D.C., M.A., A.F.) and Plant Physiology Unit (T.A.), Faculty of Pharmacy, University of Barcelona, Barcelona, Spain.ORCID 0000-0002-0741-2388
Center for Research in Agricultural Genomics · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Farnesyl diphosphate synthase (FPS) catalyzes the synthesis of farnesyl diphosphate from isopentenyl diphosphate and dimethylallyl diphosphate. Arabidopsis (Arabidopsis thaliana) contains two genes (FPS1 and FPS2) encoding FPS. Single fps1 and fps2 knockout mutants are phenotypically indistinguishable from wild-type plants, while fps1/fps2 double mutants are embryo lethal. To assess the effect of FPS down-regulation at postembryonic developmental stages, we generated Arabidopsis conditional knockdown mutants expressing artificial microRNAs devised to simultaneously silence both FPS genes. Induction of silencing from germination rapidly caused chlorosis and a strong developmental phenotype that led to seedling lethality. However, silencing of FPS after seed germination resulted in a slight developmental delay only, although leaves and cotyledons continued to show chlorosis and altered chloroplasts. Metabolomic analyses also revealed drastic changes in the profile of sterols, ubiquinones, and plastidial isoprenoids. RNA sequencing and reverse transcription-quantitative polymerase chain reaction transcriptomic analysis showed that a reduction in FPS activity levels triggers the misregulation of genes involved in biotic and abiotic stress responses, the most prominent one being the rapid induction of a set of genes related to the jasmonic acid pathway. Down-regulation of FPS also triggered an iron-deficiency transcriptional response that is consistent with the iron-deficient phenotype observed in FPS-silenced plants. The specific inhibition of the sterol biosynthesis pathway by chemical and genetic blockage mimicked these transcriptional responses, indicating that sterol depletion is the primary cause of the observed alterations. Our results highlight the importance of sterol homeostasis for normal chloroplast development and function and reveal important clues about how isoprenoid and sterol metabolism is integrated within plant physiology and development.

Indexed as

ArabidopsisArabidopsis ProteinsBlotting, WesternChloroplastsCyclopentanesGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGene SilencingGeranyltranstransferaseIronMicroscopy, ConfocalMicroscopy, Electron, TransmissionMutationOxylipinsPlants, Genetically ModifiedArabidopsis ProteinsCyclopentanesGeranyltranstransferaseIronjasmonic acidOxylipinsSterols

Identifiers

PMID27382138
PMCPMC5074618
OpenAlexW2460803645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.