ArticleFrontiers in genetics2016
Development of SSR Markers and Assessment of Genetic Diversity in Medicinal Chrysanthemum morifolium Cultivars.
Article in Frontiers in genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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28 citing papers in PubMed, 88 citations in OpenAlex.
- Dissecting genetic diversity and population structure in intergeneric citrus population using morphological and SSR markers.Scientific reports · 2026Article
- Genetic diversity and yield trait associations in soybean germplasm using SSR markers.PloS one · 2026Article
- Genetic Diversity and Population Structure of Shanlan Upland Rice Germplasm Based on SSR Markers.Plants (Basel, Switzerland) · 2025Article
- De novo SSR markers development and genetic diversity assessment inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025Article
- Development of Simple Sequence Repeat (SSR) Markers from a Genome Survey of aJournal of microbiology and biotechnology · 2025Article
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- Fine-Scale analysis of both wild and cultivated horned galls provides insight into their quality differentiation.BMC plant biology · 2023Article
- Development of Chloroplast Microsatellite Markers and Evaluation of Genetic Diversity and Population Structure of Cutleaf Groundcherry (Plants (Basel, Switzerland) · 2023Article
- Investigating the epidemiological relationship between vitiligo and psoriasis: a population-based study.Archives of dermatological research · 2023Article
- Genome-wide characterization leading to simple sequence repeat (SSR) markers development in Shorea robusta.Functional & integrative genomics · 2023Article
- Small cardamom genome: development and utilization of microsatellite markers from a draft genome sequence ofFrontiers in plant science · 2023Article
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- Development and validation of SSR markers related to flower color based on full-length transcriptome sequencing in Chrysanthemum.Scientific reports · 2022Article
- Basic Characteristics of Flower Transcriptome Data and Derived Novel EST-SSR Markers ofPlants (Basel, Switzerland) · 2022Article
- Genome-Wide Survey and Development of the First Microsatellite Markers Database (International journal of molecular sciences · 2022Article
- Development and Application of a Cultivar-Specific Sequence-Characterized Amplified Region (SCAR) Marker for the Detection ofPlants (Basel, Switzerland) · 2022Article
- The genusFrontiers in plant science · 2022Review
- Pharmaceutical, food potential, and molecular data ofGenetic resources and crop evolution · 2022Review
- Insights from the analysis of draft genome sequence ofBioinformation · 2022Article
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chrysanthemum morifolium, is a well-known flowering plant worldwide, and has a high commercial, floricultural, and medicinal value. In this study, simple-sequence repeat (SSR) markers were generated from EST datasets and were applied to assess the genetic diversity among 32 cultivars. A total of 218 in silico SSR loci were identified from 7300 C. morifolium ESTs retrieved from GenBank. Of all SSR loci, 61.47% of them (134) were hexa-nucleotide repeats, followed by tri-nucleotide repeats (17.89%), di-nucleotide repeats (12.39%), tetra-nucleotide repeats (4.13%), and penta-nucleotide repeats (4.13%). In this study, 17 novel EST-SSR markers were verified. Along with 38 SSR markers reported previously, 55 C. morifolium SSR markers were selected for further genetic diversity analysis. PCR amplification of these EST-SSRs produced 1319 fragments, 1306 of which showed polymorphism. The average polymorphism information content of the SSR primer pairs was 0.972 (0.938-0.993), which showed high genetic diversity among C. morifolium cultivars. Based on SSR markers, 32 C. morifolium cultivars were separated into two main groups by partitioning of the clusters using the unweighted pair group method with arithmetic mean dendrogram, which was further supported by a principal coordinate analysis plot. Phylogenetic relationship among C. morifolium cultivars as revealed by SSR markers was highly consistent with the classification of medicinal C. morifolium populations according to their origin and ecological distribution. Our results demonstrated that SSR markers were highly reproducible and informative, and could be used to evaluate genetic diversity and relationships among medicinal C. morifolium cultivars.
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