Evidence map›Paper›PMID 27378374›Full record

ArticleNature communications2016

Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses.

Katannya Kapeli, Gabriel A Pratt, Anthony Q Vu, Kasey R Hutt, Fernando J Martinez, Balaji Sundararaman, Ranjan Batra, Peter Freese, Nicole J Lambert, Stephanie C Huelga and 15 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 179 citations in OpenAlex.

  1. Article
  2. TDP-43: [GU]-ardian of the transcriptome.Molecular neurodegeneration · 2026
    Review
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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 2 countries.

Katannya KapeliDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Gabriel A PrattDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Anthony Q VuDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Kasey R HuttDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Fernando J MartinezDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Balaji SundararamanDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Ranjan BatraDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Peter FreeseDepartment of Biology, MIT, Cambridge, Massachusetts 02142, USA.
Nicole J LambertDepartment of Biology, MIT, Cambridge, Massachusetts 02142, USA.
Stephanie C HuelgaDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Seung J ChunIonis Pharmaceuticals, Carlsbad, California 92010, USA.
Tiffany Y LiangDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
Jeremy ChangDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
John P DonohueDepartment of Molecular, Cell and Developmental Biology, Sinsheimer Labs, University of California, Santa Cruz, California 95064, USA.
Lily ShiueDepartment of Molecular, Cell and Developmental Biology, Sinsheimer Labs, University of California, Santa Cruz, California 95064, USA.
Jiayu ZhangDepartment of Molecular and Cellular Biochemistry, College of Medicine, University of Kentucky, Lexington, Kentucky 40536, USA.
Haining ZhuDepartment of Molecular and Cellular Biochemistry, College of Medicine, University of Kentucky, Lexington, Kentucky 40536, USA.
Franca CambiDepartment of Neurology, University of Kentucky, Lexington, Kentucky 40536, USA.
Edward KasarskisDepartment of Neurology, University of Kentucky, Lexington, Kentucky 40536, USA.
Shawn HoonMolecular Engineering Laboratory, A*STAR, Singapore 138673, Singapore.
Manuel AresDepartment of Molecular, Cell and Developmental Biology, Sinsheimer Labs, University of California, Santa Cruz, California 95064, USA.
Christopher B BurgeDepartment of Biology, MIT, Cambridge, Massachusetts 02142, USA.
John RavitsDepartment of Neurosciences, University of California at San Diego, La Jolla, California 92093, USA.
Frank RigoIonis Pharmaceuticals, Carlsbad, California 92010, USA.
Gene W YeoDepartment of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, California 92093, USA.
University of California, San Diego · USUniversity of Kentucky · USIIT@MIT · USUniversity of California, Santa Cruz · USIonis Pharmaceuticals (United States) · USAgency for Science, Technology and Research · SG

Funding

Comprhensive analysis of functional RNA elements encoded in the human genomeU54HG007005 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2012 to 2017
$12.5M
Functional RNA elements in the human genomeR01HG004659 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Kevin Daniel Corbett, Eugene Wei-Ming Yeo · 2008 to 2026
$12.4M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Defining the messenger RNP code in the brainR01NS075449 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI YEO, EUGENE WEI-MING · 2012 to 2016
$3.0M
Role of FUS in ALSR01NS077284 · NINDS · UNIVERSITY OF KENTUCKY · PI ZHU, HAINING · 2011 to 2014
$1.3M
FUS Protein Homeostasis in ALSI01BX002149 · VA · VA MEDICAL CENTER - LEXINGTON, KY · PI ZHU, HAINING · 2016 to 2023
–
NHGRI NIH HHS R01 HG004659NHGRI NIH HHS U54 HG007005NIGMS NIH HHS T32 GM008666NINDS NIH HHS R01 NS075449NINDS NIH HHS R01 NS077284
6 · The paper itself

Abstract

The RNA-binding protein (RBP) TAF15 is implicated in amyotrophic lateral sclerosis (ALS). To compare TAF15 function to that of two ALS-associated RBPs, FUS and TDP-43, we integrate CLIP-seq and RNA Bind-N-Seq technologies, and show that TAF15 binds to ∼4,900 RNAs enriched for GGUA motifs in adult mouse brains. TAF15 and FUS exhibit similar binding patterns in introns, are enriched in 3' untranslated regions and alter genes distinct from TDP-43. However, unlike FUS and TDP-43, TAF15 has a minimal role in alternative splicing. In human neural progenitors, TAF15 and FUS affect turnover of their RNA targets. In human stem cell-derived motor neurons, the RNA profile associated with concomitant loss of both TAF15 and FUS resembles that observed in the presence of the ALS-associated mutation FUS R521G, but contrasts with late-stage sporadic ALS patients. Taken together, our findings reveal convergent and divergent roles for FUS, TAF15 and TDP-43 in RNA metabolism.

Indexed as

3' Untranslated RegionsAlternative SplicingAmyotrophic Lateral SclerosisAnimalsComputational BiologyDisease Models, AnimalDNA-Binding ProteinsFemaleFibroblastsGene Knockdown TechniquesHigh-Throughput Nucleotide SequencingHumansInduced Pluripotent Stem CellsIntronsMiceMice, Inbred C57BL3' Untranslated RegionsDNA-Binding ProteinsFUS protein, humanFUS protein, mouseOligonucleotides, AntisenseRNA-Binding Protein FUSRNA, MessengerRNA, Small InterferingTAF15 protein, humanTAF15 protein, mouseTARDBP protein, humanTardbp protein, mouseTATA-Binding Protein Associated Factors

Identifiers

PMID27378374
PMCPMC4935974
OpenAlexW2465057958

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.