Evidence map›Paper›PMID 27377641›Full record

ArticleScientific reports2016

Self-Assembly of Amphiphilic Dendrimers: The Role of Generation and Alkyl Chain Length in siRNA Interaction.

Valeria Márquez-Miranda, Ingrid Araya-Durán, María Belén Camarada, Jeffrey Comer, Jesús A Valencia-Gallegos, Fernando Danilo González-Nilo

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Core-size and geometryRSC advances · 2024
    Article
  3. Review
  4. Article
  5. Article
  6. Supramolecular Self-Associations of Amphiphilic Dendrons and Their Properties.Chemistry (Weinheim an der Bergstrasse, Germany) · 2021
    Review
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 3 countries.

Valeria Márquez-MirandaUniversidad Andres Bello, Facultad de Biología, Center for Bioinformatics and Integrative Biology (CBIB), Av. República 239, Santiago, Chile.
Ingrid Araya-DuránUniversidad Andres Bello, Facultad de Biología, Center for Bioinformatics and Integrative Biology (CBIB), Av. República 239, Santiago, Chile.
María Belén CamaradaUniversidad Bernardo O Higgins, Laboratorio de Bionanotecnología, General Gana 1702, Santiago, Chile.
Jeffrey ComerKansas State University, Nanotechnology Innovation Center of Kansas State, Institute of Computational Comparative Medicine, Anatomy and Physiology, Kansas, USA.
Jesús A Valencia-GallegosCentro de Biotecnología FEMSA, Escuela de Ingeniería y Ciencias, Tecnológico de Monterrey, Av. Eugenio Garza Sada 2501 Sur, Col. Tecnológico, Monterrey, N.L, México.
Fernando Danilo González-NiloUniversidad Andres Bello, Facultad de Biología, Center for Bioinformatics and Integrative Biology (CBIB), Av. República 239, Santiago, Chile.
Fraunhofer Chile Research Foundation · CLKansas State University · USTecnológico de Monterrey · MXUniversidad Andrés Bello · CLUniversidad Bernardo O'Higgins · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An ideal nucleic-acid transfection system should combine the physical and chemical characteristics of cationic lipids and linear polymers to decrease cytotoxicity and uptake limitations. Previous research described new types of carriers termed amphiphilic dendrimers (ADs), which are based on polyamidoamine dendrimers (PAMAM). These ADs display the cell membrane affinity advantage of lipids and preserve the high affinity for DNA possessed by cationic dendrimers. These lipid/dendrimer hybrids consist of a low-generation, hydrophilic dendron (G2, G1, or G0) bonded to a hydrophobic tail. The G2-18C AD was reported to be an efficient siRNA vector with significant gene silencing. However, shorter tail ADs (G2-15C and G2-13C) and lower generation (G0 and G1) dendrimers failed as transfection carriers. To date, the self-assembly phenomenon of this class of amphiphilic dendrimers has not been molecularly explored using molecular simulation methods. To gain insight into these systems, the present study used coarse-grained molecular dynamics simulations to describe how ADs are able to self-assemble into an aggregate, and, specifically, how tail length and generation play a key role in this event. Finally, explanations are given for the better efficiency of G2/18-C as gene carrier in terms of binding of siRNA. This knowledge could be relevant for the design of novel, safer ADs with well-optimized affinity for siRNA.

Indexed as

DendrimersLipidsModels, MolecularMolecular Dynamics SimulationNucleic Acid ConformationRNA, Small InterferingTransfectionDendrimersLipidsRNA, Small Interfering

Identifiers

PMID27377641
PMCPMC4932498
OpenAlexW2469278572

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.