Evidence map›Paper›PMID 27377249›Full record

ArticleThe Journal of cell biology2016

The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL.

Taro Mannen, Seisuke Yamashita, Kozo Tomita, Naoki Goshima, Tetsuro Hirose

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  9. Review
  10. ArcRNAs and the formation of nuclear bodies.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  11. Review
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  13. Article
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  19. Phase separation by ssDNA binding protein controlled via protein-protein and protein-DNA interactions.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Taro MannenInstitute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan.ORCID 0000-0002-7227-8509
Seisuke YamashitaGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8562, Japan.
Kozo TomitaGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa 277-8562, Japan.ORCID 0000-0002-7374-3898
Naoki GoshimaMolecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, Koutou 135-0064, Japan.
Tetsuro HiroseInstitute for Genetic Medicine, Hokkaido University, Sapporo 060-0815, Japan hirose@igm.hokudai.ac.jp.ORCID 0000-0003-1068-5464
Hokkaido University · JPThe University of Tokyo · JPNational Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mammalian cell nucleus contains membraneless suborganelles referred to as nuclear bodies (NBs). Some NBs are formed with an architectural RNA (arcRNA) as the structural core. Here, we searched for new NBs that are built on unidentified arcRNAs by screening for ribonuclease (RNase)-sensitive NBs using 32,651 fluorescently tagged human cDNA clones. We identified 32 tagged proteins that required RNA for their localization in distinct nuclear foci. Among them, seven RNA-binding proteins commonly localized in the Sam68 nuclear body (SNB), which was disrupted by RNase treatment. Knockdown of each SNB protein revealed that SNBs are composed of two distinct RNase-sensitive substructures. One substructure is present as a distinct NB, termed the DBC1 body, in certain conditions, and the more dynamic substructure including Sam68 joins to form the intact SNB. HNRNPL acts as the adaptor to combine the two substructures and form the intact SNB through the interaction of two sets of RNA recognition motifs with the putative arcRNAs in the respective substructures.

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SequenceAnimalsCell Line, TumorDNA-Binding ProteinsHeterogeneous-Nuclear Ribonucleoprotein LHumansIntranuclear Inclusion BodiesMiceModels, BiologicalNIH 3T3 CellsProtein DomainsRibonucleasesRibonucleoproteinsRNA-Binding ProteinsRNA Recognition MotifAdaptor Proteins, Signal TransducingCCAR2 protein, humanDNA-Binding ProteinsHeterogeneous-Nuclear Ribonucleoprotein LHNRNPL protein, humanKHDRBS1 protein, humanRibonucleasesRibonucleoproteinsRNA-Binding Proteins

Identifiers

PMID27377249
PMCPMC4932371
OpenAlexW2473064850

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.