Evidence map›Paper›PMID 27376589›Full record

ArticleNature structural & molecular biology2016

Free backbone carbonyls mediate rhodopsin activation.

Naoki Kimata, Andreyah Pope, Omar B Sanchez-Reyes, Markus Eilers, Chikwado A Opefi, Martine Ziliox, Philip J Reeves, Steven O Smith

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Coordination of bilayer properties by an inward-rectifier KJournal of structural biology: X · 2024
    Article
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  4. Article
  5. Magic angle spinning NMR of G protein-coupled receptors.Progress in nuclear magnetic resonance spectroscopy · 2022
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Naoki KimataDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Andreyah PopeDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Omar B Sanchez-ReyesDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Markus EilersDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Chikwado A OpefiSchool of Biological Sciences, University of Essex, Essex, UK.
Martine ZilioxDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Philip J ReevesSchool of Biological Sciences, University of Essex, Essex, UK.
Steven O SmithDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.ORCID 0000-0003-1861-7159
Stony Brook University · USUniversity of Essex · GB

Funding

Structure and Activation Mechanism of the Visual Pigment RhodopsinR01GM041412 · NIGMS · YALE UNIVERSITY · PI SMITH, STEVEN OWEN · 1989 to 2014
$4.4M
NIGMS NIH HHS R01 GM041412
6 · The paper itself

Abstract

Conserved prolines in the transmembrane helices of G-protein-coupled receptors (GPCRs) are often considered to function as hinges that divide the helix into two segments capable of independent motion. Depending on their potential to hydrogen-bond, the free C=O groups associated with these prolines can facilitate conformational flexibility, conformational switching or stabilization of the receptor structure. To address the role of conserved prolines in family A GPCRs through solid-state NMR spectroscopy, we focus on bovine rhodopsin, a GPCR in the visual receptor subfamily. The free backbone C=O groups on helices H5 and H7 stabilize the inactive rhodopsin structure through hydrogen-bonds to residues on adjacent helices. In response to light-induced isomerization of the retinal chromophore, hydrogen-bonding interactions involving these C=O groups are released, thus facilitating repacking of H5 and H7 onto the transmembrane core of the receptor. These results provide insights into the multiple structural and functional roles of prolines in membrane proteins.

Indexed as

Allosteric RegulationAnimalsCattleHEK293 CellsHumansHydrogen BondingKetonesLight Signal TransductionModels, MolecularProtein BindingProtein Conformation, alpha-HelicalRhodopsinTransducinKetonesRhodopsinTransducin

Identifiers

PMID27376589
PMCPMC4972713
OpenAlexW2473604086

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.