Evidence map›Paper›PMID 27376588›Full record

ArticleNature structural & molecular biology2016

The bicoid mRNA localization factor Exuperantia is an RNA-binding pseudonuclease.

Daniela Lazzaretti, Katharina Veith, Katharina Kramer, Claire Basquin, Henning Urlaub, Uwe Irion, Fulvia Bono

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In one paragraph

Article in Nature structural & molecular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. PXL: a Nucleic Acid-Binding Module of Promyelocytic Leukemia Protein.bioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Structure-function analysis of microRNA 3'-end trimming by Nibbler.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  8. Review
  9. An Interaction Network of RNA-Binding Proteins Involved inMolecular & cellular proteomics : MCP · 2020
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. eLife · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Daniela LazzarettiMax Planck Institute for Developmental Biology, Tübingen, Germany.ORCID 0000-0002-5372-9343
Katharina VeithMax Planck Institute for Developmental Biology, Tübingen, Germany.
Katharina KramerBioanalytical Mass Spectrometry, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Claire BasquinMax Planck Institute of Biochemistry, Martinsried, Germany.
Henning UrlaubBioanalytical Mass Spectrometry, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Uwe IrionMax Planck Institute for Developmental Biology, Tübingen, Germany.
Fulvia BonoMax Planck Institute for Developmental Biology, Tübingen, Germany.
Max Planck Institute for Developmental Biology · DEUniversität Hamburg · DEMax Planck Institute of Biochemistry · DEUniversitätsmedizin Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anterior patterning in Drosophila is mediated by the localization of bicoid (bcd) mRNA at the anterior pole of the oocyte. Exuperantia (Exu) is a putative exonuclease (EXO) associated with bcd and required for its localization. We present the crystal structure of Exu, which reveals a dimeric assembly with each monomer consisting of a 3'-5' EXO-like domain and a sterile alpha motif (SAM)-like domain. The catalytic site is degenerate and inactive. Instead, the EXO-like domain mediates dimerization and RNA binding. We show that Exu binds RNA directly in vitro, that the SAM-like domain is required for RNA binding activity and that Exu binds a structured element present in the bcd 3' untranslated region with high affinity. Through structure-guided mutagenesis, we show that Exu dimerization is essential for bcd localization. Our data demonstrate that Exu is a noncanonical RNA-binding protein with EXO-SAM-like domain architecture that interacts with its target RNA as a homodimer.

Indexed as

AnimalsCatalytic DomainCrystallography, X-RayDrosophila melanogasterDrosophila ProteinsEgg ProteinsExonucleasesFemaleHomeodomain ProteinsHydrogen BondingHydrophobic and Hydrophilic InteractionsModels, MolecularNucleic Acid ConformationProtein BindingProtein Interaction Domains and MotifsProtein Multimerizationbcd protein, DrosophilaDrosophila ProteinsEgg ProteinsExonucleasesexu protein, DrosophilaHomeodomain ProteinsRNARNA-Binding ProteinsTrans-Activators

Identifiers

PMID27376588
OpenAlexW2464519447

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.