Evidence map›Paper›PMID 27376470›Full record

ArticleNature immunology2016

Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment.

Hao Yuan Kueh, Mary A Yui, Kenneth K H Ng, Shirley S Pease, Jingli A Zhang, Sagar S Damle, George Freedman, Sharmayne Siu, Irwin D Bernstein, Michael B Elowitz and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Transcriptional network dynamics in early T cell development.The Journal of experimental medicine · 2024
    Review
  12. Review
  13. Transcriptional priming and chromatin regulation during stochastic cell fate specification.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  14. T-cell commitment inheritance-an agent-based multi-scale model.NPJ systems biology and applications · 2024
    Article
  15. Article
  16. Review
  17. T-cell commitment inheritance - an agent-based multi-scale model.bioRxiv : the preprint server for biology · 2023
    Article
  18. Review
  19. T cells in health and disease.Signal transduction and targeted therapy · 2023
    Review
  20. Review

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Hao Yuan KuehDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Mary A YuiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Kenneth K H NgDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Shirley S PeaseDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Jingli A ZhangDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Sagar S DamleDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
George FreedmanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Sharmayne SiuDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Irwin D BernsteinClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Michael B ElowitzDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.
Ellen V RothenbergDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0002-3901-347X
California Institute of Technology · USFred Hutch Cancer Center · US

Funding

Expansion of Cardiac and Hematopoietic Pregenitors by Wnt and NotchU01HL100395 · NHLBI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BERNSTEIN, IRWIN D, MOON, RANDALL TODD · 2009 to 2015
$8.4M
LINEAGE COMMITMENT MECHANISMS IN LYMPHOID PRECURSORSR01CA090233 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2001 to 2011
$3.9M
Kinetic modeling and single-cell molecular mechanisms of early T-cell commitmentR01HL119102 · NHLBI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI PETERSON, CARSTEN, ROTHENBERG, ELLEN V. · 2014 to 2018
$3.0M
Key nodes in the T-cell developmental gene regulatory networkR01AI095943 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2011 to 2015
$2.0M
Early T cell checkpoint violation in NOD miceR01AI064590 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI YUI, MARY A · 2006 to 2010
$1.9M
Bcl11b in early T cell developmentR01AI083514 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2011 to 2015
$1.8M
Reverse engineering genetic network architecture of stem-cell/lymphocyte transitiR33HL089123 · NHLBI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2007 to 2009
$1.6M
Dynamic Epigenetic Mapping of a Stem Cell Differentiation ChoiceRC2CA148278 · NCI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V., WOLD, BARBARA J · 2009 to 2010
$1.6M
Single-cell analysis of immune cell fate decision makingR00HL119638 · NHLBI · UNIVERSITY OF WASHINGTON · PI KUEH, HAO YUAN · 2016 to 2018
$747k
Single cell analysis of hematopoietic cell fate determinationK99HL119638 · NHLBI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI KUEH, HAO YUAN · 2014 to 2015
$180k
NCI NIH HHS R01 CA090233NCI NIH HHS RC2 CA148278NHLBI NIH HHS K99 HL119638NHLBI NIH HHS R00 HL119638NHLBI NIH HHS R01 HL119102NHLBI NIH HHS R33 HL089123NHLBI NIH HHS U01 HL100395NIAID NIH HHS R01 AI064590NIAID NIH HHS R01 AI083514NIAID NIH HHS R01 AI095943
6 · The paper itself

Abstract

During T cell development, multipotent progenitors relinquish competence for other fates and commit to the T cell lineage by turning on Bcl11b, which encodes a transcription factor. To clarify lineage commitment mechanisms, we followed developing T cells at the single-cell level using Bcl11b knock-in fluorescent reporter mice. Notch signaling and Notch-activated transcription factors collaborate to activate Bcl11b expression irrespectively of Notch-dependent proliferation. These inputs work via three distinct, asynchronous mechanisms: an early locus 'poising' function dependent on TCF-1 and GATA-3, a stochastic-permissivity function dependent on Notch signaling, and a separate amplitude-control function dependent on Runx1, a factor already present in multipotent progenitors. Despite their necessity for Bcl11b expression, these inputs act in a stage-specific manner, providing a multitiered mechanism for developmental gene regulation.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell DifferentiationCell LineageCells, CulturedCell TrackingCore Binding Factor Alpha 2 SubunitGATA3 Transcription FactorHepatocyte Nuclear Factor 1-alphaLymphopoiesisMiceMice, 129 StrainMice, Inbred C57BLMice, TransgenicReceptors, NotchRepressor ProteinsBcl11b protein, mouseCore Binding Factor Alpha 2 SubunitGata3 protein, mouseGATA3 Transcription FactorHepatocyte Nuclear Factor 1-alphaHnf1a protein, mouseReceptors, NotchRepressor ProteinsRunx1 protein, mouseTumor Suppressor Proteins

Identifiers

PMID27376470
PMCPMC4955789
OpenAlexW2464730303

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.