ArticleInternational journal of molecular sciences2016
Analysis of the Mitochondrial Genome in Hypomyces aurantius Reveals a Novel Twintron Complex in Fungi.
Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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21 citing papers in PubMed, 33 citations in OpenAlex.
- Ecology and Fungicolous Lifestyle ofJournal of fungi (Basel, Switzerland) · 2026Article
- Utilizing mitochondrial genome sequences to understand population diversity amongFrontiers in fungal biology · 2026Article
- The complete mitochondrial genome sequence ofMitochondrial DNA. Part B, Resources · 2026Article
- Assembly, Annotation, and Comparative Analysis of Mitochondrial Genomes inInternational journal of molecular sciences · 2024Article
- Comparative Analysis of the Mitochondrial Genome Sequences ofJournal of fungi (Basel, Switzerland) · 2024Article
- Article
- The complete mitochondrial genome of Ophiocordyceps gracilis and its comparison with related species.IMA fungus · 2021Article
- Organellar Introns in Fungi, Algae, and Plants.Cells · 2021Review
- Control of Fungal Diseases in Mushroom Crops while Dealing with Fungicide Resistance: A Review.Microorganisms · 2021Review
- The Mitogenomes ofFrontiers in microbiology · 2021Article
- The complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2020Article
- Intra-specific comparison of mitochondrial genomes reveals host gene fragment exchange via intron mobility in Tremella fuciformis.BMC genomics · 2020Article
- A functional twintron, 'zombie' twintrons and a hypermobile group II intron invading itself in plant mitochondria.Nucleic acids research · 2020Article
- Mitochondrial genome and diverse inheritance patterns in Pleurotus pulmonarius.Journal of microbiology (Seoul, Korea) · 2020Article
- Fungal Mitogenomes: Relevant Features to Planning Plant Disease Management.Frontiers in microbiology · 2020Review
- Complete Mitochondrial Genome of the Fungal Biocontrol AgentFrontiers in microbiology · 2020Article
- Exploring the Relationship Among Divergence Time and Coding and Non-coding Elements in the Shaping of Fungal Mitochondrial Genomes.Frontiers in microbiology · 2020Article
- Proposal of a new nomenclature for introns in protein-coding genes in fungal mitogenomes.IMA fungus · 2019Article
- The mitochondrial genome of Endoconidiophora resinifera is intron rich.Scientific reports · 2018Article
- Comparison of the Mitochondrial Genome Sequences of SixFrontiers in microbiology · 2018Article
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Hypomyces aurantius is a mycoparasite that causes cobweb disease, a most serious disease of cultivated mushrooms. Intra-species identification is vital for disease control, however the lack of genomic data makes development of molecular markers challenging. Small size, high copy number, and high mutation rate of fungal mitochondrial genome makes it a good candidate for intra and inter species differentiation. In this study, the mitochondrial genome of H. H.a0001 was determined from genomic DNA using Illumina sequencing. The roughly 72 kb genome shows all major features found in other Hypocreales: 14 common protein genes, large and small subunit rRNAs genes and 27 tRNAs genes. Gene arrangement comparison showed conserved gene orders in Hypocreales mitochondria are relatively conserved, with the exception of Acremonium chrysogenum and Acremonium implicatum. Mitochondrial genome comparison also revealed that intron length primarily contributes to mitogenome size variation. Seventeen introns were detected in six conserved genes: five in cox1, four in rnl, three in cob, two each in atp6 and cox3, and one in cox2. Four introns were found to contain two introns or open reading frames: cox3-i2 is a twintron containing two group IA type introns; cox2-i1 is a group IB intron encoding two homing endonucleases; and cox1-i4 and cox1-i3 both contain two open reading frame (ORFs). Analyses combining secondary intronic structures, insertion sites, and similarities of homing endonuclease genes reveal two group IA introns arranged side by side within cox3-i2. Mitochondrial data for H. aurantius provides the basis for further studies relating to population genetics and species identification.
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