Evidence map›Paper›PMID 27375945›Full record

ArticleBiomedical optics express2016

Applicability, usability, and limitations of murine embryonic imaging with optical coherence tomography and optical projection tomography.

Manmohan Singh, Raksha Raghunathan, Victor Piazza, Anjul M Davis-Loiacono, Alex Cable, Tegy J Vedakkan, Trevor Janecek, Michael V Frazier, Achuth Nair, Chen Wu and 3 more

Abstract read
In one paragraph

Article in Biomedical optics express, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mouse embryo phenotyping with optical coherence tomography.Frontiers in cell and developmental biology · 2022
    Review
  7. Article
  8. Systematic imaging in medicine: a comprehensive review.European journal of nuclear medicine and molecular imaging · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. High-resolution μCT of a mouse embryo using a compact laser-driven X-ray betatron source.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Manmohan SinghDepartment of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, 77204, USA.
Raksha RaghunathanDepartment of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, 77204, USA.
Victor PiazzaMolecular Physiology and Biophysics, Baylor College of Medicine, One Baylor Plaza, Houston, 77584, USA.
Anjul M Davis-LoiaconoThorlabs, Inc., 56 Sparta Ave., Newton, 07860, USA.
Alex CableThorlabs, Inc., 56 Sparta Ave., Newton, 07860, USA.
Tegy J VedakkanMolecular Physiology and Biophysics, Baylor College of Medicine, One Baylor Plaza, Houston, 77584, USA.
Trevor JanecekDepartment of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, 77204, USA.
Michael V FrazierDepartment of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, 77204, USA.
Achuth NairDepartment of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, 77204, USA.
Chen WuDepartment of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, 77204, USA.
Irina V LarinaMolecular Physiology and Biophysics, Baylor College of Medicine, One Baylor Plaza, Houston, 77584, USA.
Mary E DickinsonMolecular Physiology and Biophysics, Baylor College of Medicine, One Baylor Plaza, Houston, 77584, USA.
Kirill V LarinDepartment of Biomedical Engineering, University of Houston, 3605 Cullen Boulevard, Houston, 77204, USA; Molecular Physiology and Biophysics, Baylor College of Medicine, One Baylor Plaza, Houston, 77584, USA; Department of Electrical Engineering, Samara National Research University, Samara, 34 Moskovskoye sh., 443086, Russia.

Funding

Consortium for Broad Based Disease Phenotyping of Knockout MiceU54HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI BEAUDET, ARTHUR L., PAYLOR, RICHARD E · 2011 to 2015
$17.0M
VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Molecular Physiology of the Cardiovascular SystemT32HL007676 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI HAMILTON, SUSAN L · 1989 to 2020
$7.9M
Optical Coherence Elastography of the CorneaR01EY022362 · NEI · UNIVERSITY OF HOUSTON · PI Salavat R Aglyamov, Kirill V Larin · 2012 to 2026
$6.7M
Optical Coherence Tomography to Study Effect of Poly - Drug Exposure on Fetal Brain DevelopmentR01HD086765 · NICHD · UNIVERSITY OF HOUSTON · PI Kirill V Larin, Irina Larina · 2016 to 2026
$5.0M
Biomechanics of early mammalian cardiogenesisR01HL120140 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI LARINA, IRINA · 2013 to 2017
$2.0M
Phenotyping embryonic mammalian heart function using OCTR01HL095586 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI DICKINSON, MARY E, LARIN, KIRILL V · 2009 to 2012
$1.7M
Imaging fluid forces in mouse cardiovascular developmentR01HL077187 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI DICKINSON, MARY E · 2005 to 2007
$1.1M
NHGRI NIH HHS U54 HG006348NHLBI NIH HHS R01 HL077187NHLBI NIH HHS R01 HL095586NHLBI NIH HHS R01 HL120140NHLBI NIH HHS T32 HL007676NICHD NIH HHS R01 HD086765
6 · The paper itself

Abstract

We present an analysis of imaging murine embryos at various embryonic developmental stages (embryonic day 9.5, 11.5, and 13.5) by optical coherence tomography (OCT) and optical projection tomography (OPT). We demonstrate that while OCT was capable of rapid high-resolution live 3D imaging, its limited penetration depth prevented visualization of deeper structures, particularly in later stage embryos. In contrast, OPT was able to image the whole embryos, but could not be used in vivo because the embryos must be fixed and cleared. Moreover, the fixation process significantly altered the embryo morphology, which was quantified by the volume of the eye-globes before and after fixation. All of these factors should be weighed when determining which imaging modality one should use to achieve particular goals of a study.

Indexed as

(110.4500) Optical coherence tomography(110.6955) Tomographic imaging(170.3880) Medical and biological imaging

Identifiers

PMID27375945
PMCPMC4918583

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.