Evidence map›Paper›PMID 27375667›Full record

ArticleFrontiers in plant science2016

Lack of H(+)-pyrophosphatase Prompts Developmental Damage in Arabidopsis Leaves on Ammonia-Free Culture Medium.

Mayu Fukuda, Shoji Segami, Takaaki Tomoyama, Mariko Asaoka, Yoichi Nakanishi, Shizuka Gunji, Ali Ferjani, Masayoshi Maeshima

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Overexpression of vacuolar HFrontiers in plant science · 2024
    Article
  3. Article
  4. Roles of type II HFrontiers in plant science · 2023
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Lack of Vacuolar HFrontiers in plant science · 2020
    Article
  11. The flip side of theThe Journal of biological chemistry · 2019
    Article
  12. Vacuolar Proton Pyrophosphatase Is Required for High Magnesium Tolerance inInternational journal of molecular sciences · 2018
    Article
  13. Article
  14. Vacuolar HThe Plant cell · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mayu FukudaLaboratory of Cell Dynamics, Graduate School of Bioagricultural Sciences, Nagoya University Nagoya, Japan.
Shoji SegamiLaboratory of Cell Dynamics, Graduate School of Bioagricultural Sciences, Nagoya University Nagoya, Japan.
Takaaki TomoyamaLaboratory of Cell Dynamics, Graduate School of Bioagricultural Sciences, Nagoya University Nagoya, Japan.
Mariko AsaokaLaboratory of Cell Dynamics, Graduate School of Bioagricultural Sciences, Nagoya UniversityNagoya, Japan; Department of Biology, Tokyo Gakugei University, KoganeiTokyo, Japan.
Yoichi NakanishiLaboratory of Cell Dynamics, Graduate School of Bioagricultural Sciences, Nagoya University Nagoya, Japan.
Shizuka GunjiDepartment of Biology, Tokyo Gakugei University, Koganei Tokyo, Japan.
Ali FerjaniDepartment of Biology, Tokyo Gakugei University, Koganei Tokyo, Japan.
Masayoshi MaeshimaLaboratory of Cell Dynamics, Graduate School of Bioagricultural Sciences, Nagoya University Nagoya, Japan.
Nagoya University · JPTokyo Gakugei University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The plant vacuolar H(+)-pyrophosphatase (H(+)-PPase) functions as a proton pump coupled with the hydrolysis of pyrophosphate (PPi). Loss-of-function mutants (fugu5s and vhp1) of the H(+)-PPase of Arabidopsis thaliana show clear morphological phenotypes in the cotyledons, caused by inhibition of gluconeogenesis from seed storage lipids due to excessive accumulation of PPi. In this study, we investigated the phenotypes of the fugu5 and vhp1 mutants during vegetative growth under a specific nitrogen nutritional regime. When nitrate in the culture medium was the sole nitrogen source, growth of the mutant rosette leaves was severely compromised. Interestingly, trypan blue staining revealed notable cell death at the leaf blade-petiole junctions of young leaves, a region known to have meristematic features. Physical contact of the leaf tip with the culture medium also triggered leaf atrophy, suggesting that absorption of some elements through the hydathodes was probably involved in this phenotype. Prevention of such leaf-medium contact resulted in a marked decrease in phosphate content in the shoots, and suppressed leaf atrophy. Furthermore, fugu5 necrotic symptoms were rescued completely by heterologous expression of yeast cytosolic soluble pyrophosphatase IPP1 or uncoupling-type H(+)-PPases that retained only PPi-hydrolysis activity, indicating that the damage of actively proliferating cells was caused by the loss of the PPi-hydrolyzing function of H(+)-PPase. Importantly, cell death and growth defects of the fugu5 leaves were suppressed completely by the simple addition of ammonium (>1 mM) to the culture medium. The PPi content in the shoots of fugu5 grown on ammonium-free medium was 70% higher than that of the wild type, and PPi levels were restored to normal upon growth on ammonium-supplemented medium. Together, these findings suggest that the PPi-hydrolyzing activity of H(+)-PPase is essential to maintain the PPi contents at optimal levels when grown on ammonium-free culture medium, and any direct contact of the leaves with the culture medium may raise PPi levels in the leaves through increased phosphate uptake.

Indexed as

Arabidopsis thalianaH+-pyrophosphataseplant growthproton pumppyrophosphatevacuole

Identifiers

PMID27375667
PMCPMC4901044
OpenAlexW2414430863

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.