ArticlePlant physiology2016
The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).
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Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.
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37citing papers in PubMed, 1 pooled it
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37 citing papers in PubMed, 1 synthesis or guideline pooled it.
- A trait-based framework for seagrass ecology: Trends and prospects.Frontiers in plant science · 2023Pooled it
- The chromosomal-level genome assembly and annotation of Phyllospadix iwatensis (Surfgrass).Scientific data · 2026Article
- Florigen and antiflorigen gene expression correlates with reproductive state in a marine angiosperm,iScience · 2025Article
- Thermally PrimedEcology and evolution · 2024Article
- The chromosome-level genome of the submerged plant Cryptocoryne crispatula provides insights into the terrestrial-freshwater transition in Araceae.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024Article
- Chloroplast genomic comparison provides insights into the evolution of seagrasses.BMC plant biology · 2023Article
- Loss of plastidComputational and structural biotechnology journal · 2023Article
- Comparative analysis of mitochondrial genomes reveals marine adaptation in seagrasses.BMC genomics · 2022Article
- Tissue-specific transcriptome profiles identify functional differences key to understanding whole plant response to life in variable salinity.Biology open · 2022Article
- Phylogenomic Analyses of Alismatales Shed Light into Adaptations to Aquatic Environments.Molecular biology and evolution · 2022Article
- Profiling the cell walls of seagrasses from A (Amphibolis) to Z (Zostera).BMC plant biology · 2022Article
- Pervasive genome duplications across the plant tree of life and their links to major evolutionary innovations and transitions.Computational and structural biotechnology journal · 2022Review
- Gene body DNA methylation in seagrasses: inter- and intraspecific differences and interaction with transcriptome plasticity under heat stress.Scientific reports · 2021Article
- Phenotypic plasticity under rapid global changes: The intrinsic force for future seagrasses survival.Evolutionary applications · 2021Review
- Improved chromosome-level genome assembly and annotation of the seagrass,F1000Research · 2021Article
- Comparative Chloroplast Genomes ofFrontiers in plant science · 2021Article
- Evolutionary Origins of Drought Tolerance in Spermatophytes.Frontiers in plant science · 2021Article
- mInternational journal of molecular sciences · 2020Article
- Arabinogalactan-proteins of Zostera marina L. contain unique glycan structures and provide insight into adaption processes to saline environments.Scientific reports · 2020Article
- The Cell Wall of Seagrasses: Fascinating, Peculiar and a Blank Canvas for Future Research.Frontiers in plant science · 2020Review
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Authors and funding
14 authors.
HueyTyng LeeSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).ORCID 0000-0001-8561-3161
Agnieszka A GoliczSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).
Philipp E BayerSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).ORCID 0000-0001-8530-3067
Yuannian JiaoSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).ORCID 0000-0002-8987-2782
Haibao TangSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).ORCID 0000-0002-3460-8570
Andrew H PatersonSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).
Gaurav SablokSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).
Rahul R KrishnarajSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).
Chon-Kit Kenneth ChanSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).
Jacqueline BatleySchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).
Gary A KendrickSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).ORCID 0000-0002-0276-6064
Anthony W D LarkumSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).ORCID 0000-0002-0420-134X
Peter J RalphSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.).
David EdwardsSchool of Agriculture and Food Sciences, University of Queensland, St Lucia, Queensland 4072, Australia (H.T.L., A.A.G., R.R.K., J.B., D.E.);School of Plant Biology, University of Western Australia, Crawley, Western Australia 6009, Australia (H.T.L., P.E.B., C.-K.K.C., J.B., G.A.K., D.E.);State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (Y.J.);Plant Genome Mapping Laboratory, University of Georgia, Athens, Georgia 30602 (Y.J., A.H.P.);Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, China (H.T.); andPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, New South Wales 2007, Australia (G.S., A.W.D.L., P.J.R.) dave.edwards@uwa.edu.au.ORCID 0000-0001-7599-6760
Funding
No grant is acknowledged in the PubMed record.
Abstract
Seagrasses are marine angiosperms that evolved from land plants but returned to the sea around 140 million years ago during the early evolution of monocotyledonous plants. They successfully adapted to abiotic stresses associated with growth in the marine environment, and today, seagrasses are distributed in coastal waters worldwide. Seagrass meadows are an important oceanic carbon sink and provide food and breeding grounds for diverse marine species. Here, we report the assembly and characterization of the Zostera muelleri genome, a southern hemisphere temperate species. Multiple genes were lost or modified in Z. muelleri compared with terrestrial or floating aquatic plants that are associated with their adaptation to life in the ocean. These include genes for hormone biosynthesis and signaling and cell wall catabolism. There is evidence of whole-genome duplication in Z. muelleri; however, an ancient pan-commelinid duplication event is absent, highlighting the early divergence of this species from the main monocot lineages.
Indexed as
EcosystemAdaptation, PhysiologicalAquatic OrganismsGene DuplicationGene OntologyGenes, PlantGenome, PlantMolecular Sequence AnnotationOceans and SeasPlant ProteinsSequence Analysis, RNAZosteraceaePlant Proteins
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