Evidence map›Paper›PMID 27373565›Full record

ArticleScientific reports2016

Genome-wide analysis of HIF-2α chromatin binding sites under normoxia in human bronchial epithelial cells (BEAS-2B) suggests its diverse functions.

Meng-Chang Lee, Hsin-Ju Huang, Tzu-Hao Chang, Hsieh-Chou Huang, Shen-Yuan Hsieh, Yi-Siou Chen, Wei-Yuan Chou, Chiao-Hsi Chiang, Ching-Huang Lai, Chia-Yang Shiau

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. The hypoxia-induced changes in miRNA-mRNA in RNA-induced silencing complexes and HIF-2 induced miRNAs in human endothelial cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2022
    Article
  5. Article
  6. Article
  7. Primary endothelial cell-specific regulation of hypoxia-inducible factor (HIF)-1 and HIF-2 and their target gene expression profiles during hypoxia.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
    Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Meng-Chang LeeGraduate Institute of Medical Sciences, National Defense Medical Center, Taipei, 11490 Taiwan.
Hsin-Ju HuangDepartment of Anesthesiology, Cheng Hsin General Hospital, Taipei, Taiwan.
Tzu-Hao ChangGraduate Institute of Biomedical Informatics, Taipei Medical University, Taipei, 11031 Taiwan.
Hsieh-Chou HuangDepartment of Anesthesiology, Cheng Hsin General Hospital, Taipei, Taiwan.
Shen-Yuan HsiehGraduate Institute of Medical Sciences, National Defense Medical Center, Taipei, 11490 Taiwan.
Yi-Siou ChenDepartment and Graduate Institute of Biochemistry, National Defense Medical Center, Taipei, 11490 Taiwan.
Wei-Yuan ChouDepartment and Graduate Institute of Biochemistry, National Defense Medical Center, Taipei, 11490 Taiwan.
Chiao-Hsi ChiangSchool of Pharmacy, National Defense Medical Center, Taipei, 11490 Taiwan.
Ching-Huang LaiSchool of Public Health, National Defense Medical Center, Taipei, 11490 Taiwan.
Chia-Yang ShiauGraduate Institute of Medical Sciences, National Defense Medical Center, Taipei, 11490 Taiwan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Constitutive functional HIF-2α was recently identified in cancer and stem cell lines under normoxia. In this study, BEAS-2B, a bronchial epithelial cell line, was shown to constitutively express active HIF-2α under normoxia and exhibit markers of pluripotency including Oct-4, Nanog, and sphere formation. Oct-4 expression was reduced after knockdown of HIF-2α under normoxia. Global enrichment analysis of HIF-2α demonstrated the diverse functions of HIF-2α under normoxia. Bioinformatics analysis of the enriched loci revealed an enhancer role of HIF-2α binding sites, involvement of HIF-2α interacting proteins, and enriched de novo motifs which suggest the diverse role of HIF-2α in pseudohypoxia. The low ratio of the discovered loci overlapping with those revealed in cancer cell lines 786-O (16.1%) and MCF-7 (15.9%) under hypoxia indicated a prevailing non-canonical mechanism. Hypoxia had positive, marginal or adverse effects on the enrichment of the selected loci in ChIP-PCR assays. Deletion of the N-terminal activation domain (N-TAD) of HIF-2α disrupted the reporting activity of two of the loci annotated to ELN and ANKRD31. Hypoxia incurring abundance variation of HIF-2α may misrepresent the N-TAD functions as canonical hypoxia inducible features via C-TAD activation. Elucidation of the pseudohypoxia functions of constitutive HIF-2α is useful for resolving its role in malignancy and pluripotency.

Indexed as

Amino Acid MotifsBasic Helix-Loop-Helix ProteinsBinding SitesBronchiCarcinogenesisCell DifferentiationCell HypoxiaChromatinComputational BiologyEndothelial PAS Domain-Containing Protein 1Epithelial CellsGene Expression Regulation, DevelopmentalGenome-Wide Association StudyHEK293 CellsHumansMCF-7 CellsBasic Helix-Loop-Helix ProteinsChromatinEndothelial PAS Domain-Containing Protein 1Octamer Transcription Factor-3RNA, Small Interfering

Identifiers

PMID27373565
PMCPMC4931692

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.