Evidence map›Paper›PMID 27373512›Full record

ArticleGastroenterology2016

Genetic Complexity of Crohn's Disease in Two Large Ashkenazi Jewish Families.

Adam P Levine, Nikolas Pontikos, Elena R Schiff, Luke Jostins, Doug Speed, NIDDK Inflammatory Bowel Disease Genetics Consortium, Laurence B Lovat, Jeffrey C Barrett, Helmut Grasberger, Vincent Plagnol and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Gastroenterology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 58 citations in OpenAlex.

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  15. NOD2 modulates immune tolerance via the GM-CSF-dependent generation of CD103Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Epithelial Toll-like receptors and their role in gut homeostasis and disease.Nature reviews. Gastroenterology & hepatology · 2020
    Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Adam P LevineDivision of Medicine, University College London (UCL), London, United Kingdom.
Nikolas PontikosUCL Genetics Institute, University College London (UCL), London, United Kingdom.
Elena R SchiffDivision of Medicine, University College London (UCL), London, United Kingdom.
Luke JostinsWellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Doug SpeedUCL Genetics Institute, University College London (UCL), London, United Kingdom.
NIDDK Inflammatory Bowel Disease Genetics Consortium
Laurence B LovatDepartment of Surgery and Interventional Science, National Medical Laser Centre, University College London (UCL), London, United Kingdom.
Jeffrey C BarrettMedical Genomics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Helmut GrasbergerDivision of Gastroenterology, University of Michigan Medical School, Ann Arbor, Michigan.
Vincent PlagnolUCL Genetics Institute, University College London (UCL), London, United Kingdom.
Anthony W SegalDivision of Medicine, University College London (UCL), London, United Kingdom. Electronic address: t.segal@ucl.ac.uk.
University College London · GBUniversity of Michigan–Ann Arbor · USUniversity of Oxford · GBWellcome Sanger Institute · GB

Funding

Inflammatory Bowel Disease Genetics Consortium Data Coordinating CenterU01DK062429 · NIDDK · YALE UNIVERSITY · PI CHO, JUDY H. · 2002 to 2016
$16.8M
Yale University Inflammatory Bowel Disease Genetics Research CenterU01DK062422 · NIDDK · YALE UNIVERSITY · PI Ling-shiang Chuang · 2002 to 2026
$10.8M
Defining the genetic architecture of IBD in Ashkenazi Jewish populationsR01DK092235 · NIDDK · YALE UNIVERSITY · PI CHO, JUDY H. · 2012 to 2016
$2.5M
Medical Research Council MR/L000261/1Medical Research Council MR/L012561/1NIDDK NIH HHS R01 DK092235NIDDK NIH HHS U01 DK062422NIDDK NIH HHS U01 DK062429Wellcome Trust
6 · The paper itself

Abstract

BACKGROUND &

aimsCrohn's disease (CD) is a highly heritable disease that is particularly common in the Ashkenazi Jewish population. We studied 2 large Ashkenazi Jewish families with a high prevalence of CD in an attempt to identify novel genetic risk variants.

methodsAshkenazi Jewish patients with CD and a positive family history were recruited from the University College London Hospital. We used genome-wide, single-nucleotide polymorphism data to assess the burden of common CD-associated risk variants and for linkage analysis. Exome sequencing was performed and rare variants that were predicted to be deleterious and were observed at a high frequency in cases were prioritized. We undertook within-family association analysis after imputation and assessed candidate variants for evidence of association with CD in an independent cohort of Ashkenazi Jewish individuals. We examined the effects of a variant in DUOX2 on hydrogen peroxide production in HEK293 cells.

resultsWe identified 2 families (1 with >800 members and 1 with >200 members) containing 54 and 26 cases of CD or colitis, respectively. Both families had a significant enrichment of previously described common CD-associated risk variants. No genome-wide significant linkage was observed. Exome sequencing identified candidate variants, including a missense mutation in DUOX2 that impaired its function and a frameshift mutation in CSF2RB that was associated with CD in an independent cohort of Ashkenazi Jewish individuals.

conclusionsIn a study of 2 large Ashkenazi Jewish with multiple cases of CD, we found the genetic basis of the disease to be complex, with a role for common and rare genetic variants. We identified a frameshift mutation in CSF2RB that was replicated in an independent cohort. These findings show the value of family studies and the importance of the innate immune system in the pathogenesis of CD.

Indexed as

PedigreeAdolescentAge of OnsetCrohn DiseaseCytokine Receptor Common beta SubunitDual OxidasesExomeFemaleFrameshift MutationGenetic LinkageGenetic Predisposition to DiseaseHEK293 CellsHumansJewsMaleMolecular Sequence DataCSF2RB protein, humanCytokine Receptor Common beta SubunitDual OxidasesDUOX2 protein, humanNADPH OxidasesComplex DiseaseInflammatory Bowel DiseasePedigreePopulation Isolate

Identifiers

PMID27373512
PMCPMC5643259
OpenAlexW2469322386

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.