Evidence map›Paper›PMID 27373372›Full record

ArticleScientific reports2016

Identification of Novel FAM134B (JK1) Mutations in Oesophageal Squamous Cell Carcinoma.

Md Hakimul Haque, Vinod Gopalan, Kwok-Wah Chan, Muhammad J A Shiddiky, Robert Anthony Smith, Alfred King-Yin Lam

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
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  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Md Hakimul HaqueCancer Molecular Pathology in Menzies Health Institute Queensland, Griffith University, Gold Coast, Australia.
Vinod GopalanCancer Molecular Pathology in Menzies Health Institute Queensland, Griffith University, Gold Coast, Australia.
Kwok-Wah ChanDepartment of Pathology, Li Ka Shing Faculty of Medicine, The University of Hong Kong, Queen Mary Hospital, Hong Kong.
Muhammad J A ShiddikySchool of Natural Sciences, Griffith University, Nathan Campus, Australia.
Robert Anthony SmithCancer Molecular Pathology in Menzies Health Institute Queensland, Griffith University, Gold Coast, Australia.
Alfred King-Yin LamCancer Molecular Pathology in Menzies Health Institute Queensland, Griffith University, Gold Coast, Australia.
Griffith University · AUQueen Mary Hospital · CNQueensland University of Technology · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutation of FAM134B (Family with Sequence Similarity 134, Member B) leading to loss of function of its encoded Golgi protein and has been reported induce apoptosis in neurological disorders. FAM134B mutation is still unexplored in cancer. Herein, we studied the DNA copy number variation and novel mutation sites of FAM134B in a large cohort of freshly collected oesophageal squamous cell carcinoma (ESCC) tissue samples. In ESCC tissues, 37% (38/102) showed increased FAM134B DNA copies whereas 35% (36/102) showed loss of FAM134B copies relative to matched non-cancer tissues. Novel mutations were detected in exons 4, 5, 7, 9 as well as introns 2, 4-8 of FAM134B via HRM (High-Resolution Melt) and Sanger sequencing analysis. Overall, thirty-seven FAM134B mutations were noted in which most (31/37) mutations were homozygous. FAM134B mutations were detected in all the cases with metastatic ESCC in the lymph node tested and in 14% (8/57) of the primary ESCC. Genetic alteration of FAM134B is a frequent event in the progression of ESCCs. These findings imply that mutation might be the major driving source of FAM134B genetic modulation in ESCCs.

Indexed as

Base SequenceCarcinoma, Squamous CellDNA Copy Number VariationsDNA Mutational AnalysisDNA, NeoplasmEsophageal NeoplasmsEsophageal Squamous Cell CarcinomaExonsFemaleGene AmplificationHumansIntracellular Signaling Peptides and ProteinsIntronsMaleMembrane ProteinsMiddle AgedDNA, NeoplasmIntracellular Signaling Peptides and ProteinsMembrane ProteinsNeoplasm ProteinsRETREG1 protein, human

Identifiers

PMID27373372
PMCPMC4931577
OpenAlexW2465617270

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.