Evidence map›Paper›PMID 27372181›Full record

ArticleVirology2016

Contributions of P2- and P22-like prophages to understanding the enormous diversity and abundance of tailed bacteriophages.

Sherwood R Casjens, Julianne H Grose

Abstract read
In one paragraph

Article in Virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
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  4. Review
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  16. AFrontiers in microbiology · 2023
    Article
  17. Soft rot pathogenFrontiers in microbiology · 2023
    Article
  18. Hybrid Vigor: Importance of Hybrid λ Phages in Early Insights in Molecular Biology.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  19. Diversity of carbapenem-resistantMicrobial genomics · 2022
    Article
  20. To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Sherwood R CasjensDivision of Microbiology and Immunology, Department of Pathology, University of Utah School of Medicine, University of Utah, Salt Lake City, UT 84112, United States; Department of Biology, University of Utah, Salt Lake City, UT 84112, United States. Electronic address: sherwood.casjens@path.utah.edu.
Julianne H GroseMicrobiology and Molecular Biology Department, Brigham Young University, Provo, UT 84602, United States. Electronic address: Julianne_Grose@byu.edu.
Brigham Young University · USUniversity of Utah · US

Funding

DNA packaging and delivery by dsDNA virusesR01GM114817 · NIGMS · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2014 to 2017
$1.5M
NIGMS NIH HHS R01 GM114817
6 · The paper itself

Abstract

We identified 9371 tailed phage prophages of 20 known types in reported complete genome sequences of 3298 bacteria in the Salmonella genus. These include 4758 P2 type and 744 P22 type prophages. The latter prophage types were found in the genome sequences of 127 and 24 bacterial host genera, increasing the known host ranges of phages in these groups by 114 and 20 genera, respectively. These prophage nucleotide sequences displayed much more diversity than was previously known from the 48 P2 and 24 P22 type authentic phages whose genomes have been sequenced. More detailed analysis of these prophage sequences indicated that major capsid protein (MCP) gene exchange between tailed phage clusters or types is extremely rare and that P22 prophage-encoded tailspikes correspond perfectly with their hosts' surface polysaccharide structure; thus, MCP and tailspike sequences accurately predict tailed phage type (and thus lifestyle) and host cell surface polysaccharide structure, respectively.

Indexed as

BiodiversityGenome, ViralBacteriolysisCluster AnalysisEnterobacteriaceaeGene RearrangementGenome, BacterialHost SpecificityPhylogenyProphagesRecombination, GeneticBacteriophageCaudoviralesMajor capsid proteinPhage P2Phage P22ProphageSalmonellaTailed phageTailspike

Identifiers

PMID27372181
PMCPMC4969182
OpenAlexW2461450346

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.