Evidence map›Paper›PMID 27369081›Full record

ArticleThe Journal of biological chemistry2016

Evidence That G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress.

Alicia K Byrd, Boris L Zybailov, Leena Maddukuri, Jun Gao, John C Marecki, Mihir Jaiswal, Matthew R Bell, Wezley C Griffin, Megan R Reed, Shubeena Chib and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 96 citations in OpenAlex.

  1. Article
  2. The Role of Stress Granules in Cardiovascular Diseases.Reviews in cardiovascular medicine · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Non-canonical DNA structures in the human ribosomal DNA.Histochemistry and cell biology · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Crosstalk between G-quadruplex and ROS.Cell death & disease · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Alicia K ByrdFrom the Departments of Biochemistry and Molecular Biology and.
Boris L ZybailovFrom the Departments of Biochemistry and Molecular Biology and the University of Arkansas at Little Rock/University of Arkansas for Medical Sciences (UALR/UAMS) Joint Graduate Program in Bioinformatics, University of Arkansas at Little Rock, Little Rock, Arkansas 72204.
Leena MaddukuriFrom the Departments of Biochemistry and Molecular Biology and.
Jun GaoFrom the Departments of Biochemistry and Molecular Biology and.
John C MareckiFrom the Departments of Biochemistry and Molecular Biology and.
Mihir Jaiswalthe University of Arkansas at Little Rock/University of Arkansas for Medical Sciences (UALR/UAMS) Joint Graduate Program in Bioinformatics, University of Arkansas at Little Rock, Little Rock, Arkansas 72204.
Matthew R BellFrom the Departments of Biochemistry and Molecular Biology and.
Wezley C GriffinFrom the Departments of Biochemistry and Molecular Biology and.
Megan R ReedFrom the Departments of Biochemistry and Molecular Biology and.
Shubeena ChibFrom the Departments of Biochemistry and Molecular Biology and.
Samuel G MackintoshFrom the Departments of Biochemistry and Molecular Biology and the Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205 and.
Angus M MacNicolthe Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205 and Neurobiology and Developmental Sciences and.
Giulia BaldiniFrom the Departments of Biochemistry and Molecular Biology and.
Robert L EoffFrom the Departments of Biochemistry and Molecular Biology and the Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205 and.
Kevin D RaneyFrom the Departments of Biochemistry and Molecular Biology and the Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, Arkansas 72205 and RaneyKevinD@uams.edu.
University of Arkansas at Little Rock · USUniversity of Arkansas for Medical Sciences · USWinthrop Rockefeller Foundation · US

Funding

Understanding Hesitant AdoptersP20GM103429 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Lawrence E Cornett, JERRY WARE · 2012 to 2026
$60.9M
Study of the Cell-specific Inflammasome Responses During Defense Against Gram-negative BacteriaP20GM103625 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI SMELTZER, MARK S · 2012 to 2021
$21.5M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Telemedicine CoreP30GM110702 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI GARCIA-RILL, EDGAR E. · 2014 to 2018
$6.1M
Center for Protein Structure and FunctionP30GM103450 · NIGMS · UNIVERSITY OF ARKANSAS AT FAYETTEVILLE · PI MILLETT, FRANCIS S · 2012 to 2014
$3.2M
Post-transcriptional Pathways that Signal Leptin Regulation of GonadotropesR01HD087057 · NICHD · UNIV OF ARKANSAS FOR MED SCIS · PI CHILDS, GWEN V, MACNICOL, ANGUS M · 2016 to 2020
$2.3M
Tropic Roles for Leptin in the Maturation of SomatotropesR01DK113776 · NIDDK · UNIV OF ARKANSAS FOR MED SCIS · PI CHILDS, GWEN V, MACNICOL, ANGUS M · 2017 to 2020
$1.8M
DNA Helicases: Mechanisms and FunctionsR01GM098922 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI RANEY, KEVIN DOUGLAS · 2011 to 2017
$1.7M
G-quadruplex DNA as a chemical signaling agentR01GM117439 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI RANEY, KEVIN DOUGLAS · 2015 to 2016
$589k
Leptin Molecular Regulatory Mechanisms That Prevent Growth hormone DeficiencyR03HD082793 · NICHD · UNIV OF ARKANSAS FOR MED SCIS · PI CHILDS, GWEN V, MACNICOL, ANGUS M · 2015 to 2016
$148k
NCATS NIH HHS UL1 TR000039NICHD NIH HHS R01 HD087057NICHD NIH HHS R03 HD082793NIDDK NIH HHS R01 DK113776NIGMS NIH HHS P20 GM103429NIGMS NIH HHS P20 GM103625NIGMS NIH HHS P30 GM103450NIGMS NIH HHS P30 GM110702NIGMS NIH HHS R01 GM098922NIGMS NIH HHS R01 GM117439
6 · The paper itself

Abstract

Cells engage numerous signaling pathways in response to oxidative stress that together repair macromolecular damage or direct the cell toward apoptosis. As a result of DNA damage, mitochondrial DNA or nuclear DNA has been shown to enter the cytoplasm where it binds to "DNA sensors," which in turn initiate signaling cascades. Here we report data that support a novel signaling pathway in response to oxidative stress mediated by specific guanine-rich sequences that can fold into G-quadruplex DNA (G4DNA). In response to oxidative stress, we demonstrate that sequences capable of forming G4DNA appear at increasing levels in the cytoplasm and participate in assembly of stress granules. Identified proteins that bind to endogenous G4DNA in the cytoplasm are known to modulate mRNA translation and participate in stress granule formation. Consistent with these findings, stress granule formation is known to regulate mRNA translation during oxidative stress. We propose a signaling pathway whereby cells can rapidly respond to DNA damage caused by oxidative stress. Guanine-rich sequences that are excised from damaged genomic DNA are proposed to enter the cytoplasm where they can regulate translation through stress granule formation. This newly proposed role for G4DNA provides an additional molecular explanation for why such sequences are prevalent in the human genome.

Indexed as

DNA DamageG-QuadruplexesOxidative StressProtein BiosynthesisCytoplasmCytoplasmic GranulesHeLa CellsHumansRNA, MessengerRNA, MessengerDNA repairG-quadruplexoxidative stresssignalingstress granulestress responsetelomere

Identifiers

PMID27369081
PMCPMC5016190
OpenAlexW2465424457

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.