Evidence map›Paper›PMID 27368608›Full record

ArticleLipids in health and disease2016

Proteomic profiling of cellular steatosis with concomitant oxidative stress in vitro.

Khalida Ann Lockman, Varanand Htun, Rohit Sinha, Philipp Treskes, Leonard J Nelson, Sarah F Martin, Sophie M Rogers, Thierry Le Bihan, Peter C Hayes, John N Plevris

Open access · goldAbstract read
In one paragraph

Article in Lipids in health and disease, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Khalida Ann LockmanHepatology Laboratory, University of Edinburgh, 49 Little France Crescent, Edinburgh, EH16 4SB, Scotland, UK.
Varanand HtunHepatology Laboratory, University of Edinburgh, 49 Little France Crescent, Edinburgh, EH16 4SB, Scotland, UK.
Rohit SinhaHepatology Laboratory, University of Edinburgh, 49 Little France Crescent, Edinburgh, EH16 4SB, Scotland, UK.
Philipp TreskesHepatology Laboratory, University of Edinburgh, 49 Little France Crescent, Edinburgh, EH16 4SB, Scotland, UK.
Leonard J NelsonHepatology Laboratory, University of Edinburgh, 49 Little France Crescent, Edinburgh, EH16 4SB, Scotland, UK.
Sarah F MartinKinetic Parameter Facility, SynthSys - Centre for Synthetic and Systems Biology, University of Edinburgh, Edinburgh, EH9 3BF, UK.
Sophie M RogersKinetic Parameter Facility, SynthSys - Centre for Synthetic and Systems Biology, University of Edinburgh, Edinburgh, EH9 3BF, UK.
Thierry Le BihanKinetic Parameter Facility, SynthSys - Centre for Synthetic and Systems Biology, University of Edinburgh, Edinburgh, EH9 3BF, UK.
Peter C HayesHepatology Laboratory, University of Edinburgh, 49 Little France Crescent, Edinburgh, EH16 4SB, Scotland, UK.
John N PlevrisHepatology Laboratory, University of Edinburgh, 49 Little France Crescent, Edinburgh, EH16 4SB, Scotland, UK. j.plevris@ed.ac.uk.
University of Edinburgh · GB

Funding

Chief Scientist Office ETM/182
6 · The paper itself

Abstract

backgroundNutrient excess underpins the development of nonalcoholic fatty liver disease (NAFLD). The ensuing metabolic derangement is characterised by increased cellular respiration, oxidative stress and mitochondrial impairment. We have previously recapitulated these events in an in vitro cellular steatosis model. Here, we examined the distinct patterns of protein expression involved using a proteomics approach.

methodsHuman hepatoblastoma C3A cells were treated with a combination of energy substrates; lactate (L), pyruvate (P), octanoate (O) and ammonia (N). Proteins extracts were trypsinized and analyzed on a capillary HPLC OrbitrapXL mass spectrometer. Proteins were quantified using a label-free intensity based approach. Functional enrichment analysis was performed using ToppCluster via Gene Ontology (GO) database.

resultsOf the 1327 proteins identified, 104 were differentially expressed between LPON and untreated cells (defined as: ≥2 peptides; fold change ≥1.5; p-value <0.05). Seventy of these were upregulated with LPON. Functional enrichment analysis revealed enhanced protein biosynthesis accompanied by downregulation of histones H2A type 1-A, H1.2, H1.5 and H1.0I in LPON cells. Lipid binding annotations were also enriched as well as proteins involved in cholesterol synthesis, uptake and efflux. Increased expression of aldo-keto reductase family 1, member C1 and C3 suggests enhanced sterol metabolism and increased ROS-mediated lipid peroxidation.

conclusionsThe surge of energy substrates diverts free fatty acid metabolism towards pathways that can mitigate lipotoxicity. The histones depletion may represent an adaptation to increased protein synthesis. However, this can also expose DNA to oxidative stress thus should be explored further in the context of NAFLD progression.

Indexed as

ProteomicsAldehyde ReductaseAldo-Keto ReductasesAmmoniaCaprylatesCell Line, TumorCholesterolFatty Acids, NonesterifiedGene Expression ProfilingGene Expression RegulationGene OntologyHepatocytesHistonesHumansLactic AcidLipid PeroxidationAldehyde ReductaseAldo-Keto ReductasesAmmoniaCaprylatesCholesterolFatty Acids, NonesterifiedHistonesLactic Acidoctanoic acidPyruvic AcidNonalcoholic fatty liverOxidative stressSteatohepatitis

Identifiers

PMID27368608
PMCPMC4930558
OpenAlexW2474175392

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.