Evidence map›Paper›PMID 27368372›Full record

ArticleBreast cancer research : BCR2016

Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer.

Zhi Hu, Jian-Hua Mao, Christina Curtis, Ge Huang, Shenda Gu, Laura Heiser, Marc E Lenburg, James E Korkola, Nora Bayani, Shamith Samarajiwa and 15 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Breast cancer research : BCR, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 8 institutions in 2 countries.

Zhi HuDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Jian-Hua MaoLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94127, USA.
Christina CurtisDepartment of Medicine, Division of Oncology and Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Ge HuangDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Shenda GuDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Laura HeiserDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Marc E LenburgDepartment of Pathology and Laboratory Medicine, Boston University School of Medicine, Boston, MA, 02215, USA.
James E KorkolaDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Nora BayaniLife Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94127, USA.
Shamith SamarajiwaMRC Cancer Unit, University of Cambridge, Cambridge, CB2 0XZ, UK.
Jose A SeoaneDepartment of Medicine, Division of Oncology and Department of Genetics, Stanford University School of Medicine, Stanford, CA, 94305, USA.
Mark A DaneDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Amanda EschDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Heidi S FeilerDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Nicholas J WangDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Mary Ann HardwickeGlaxoSmithKline, Collegeville, PA, 19425, USA.
Sylvie LaquerreGlaxoSmithKline, Collegeville, PA, 19425, USA.
Jeff JacksonGlaxoSmithKline, Collegeville, PA, 19425, USA.
Kenneth W WoodCytokinetics, Inc., South San Francisco, CA, 94080, USA.
Barbara WeberGlaxoSmithKline, Collegeville, PA, 19425, USA.
Paul T SpellmanDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA.
Samuel AparicioMolecular Oncology, BC Cancer Research Centre, Vancouver, Canada.
Richard WoosterGlaxoSmithKline, Collegeville, PA, 19425, USA.
Carlos CaldasCancer Research UK, Cambridge Institute, Cambridge, UK. carlos.caldas@cancer.org.uk.
Joe W GrayDepartment of Biomedical Engineering, School of Medicine, Oregon Health & Science University, 3303 SW Bond Ave., CH13B, Portland, OR, 97239, USA. Grayjo@ohsu.edu.
Oregon Health & Science University · USGlaxoSmithKline (United States) · USLawrence Berkeley National Laboratory · USStanford University · USBoston University · USCancer Research UK Cambridge Center · GBCytokinetics (United States) · USMRC Cancer Unit · GB

Funding

Tissue and Outcomes CoreP50CA058207 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BLACKBURN, ELIZABETH H · 1992 to 2012
$32.7M
Systems-Based Predictions of Responses to Cancer TherapyU54CA112970 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI KORN, WOLFGANG MICHAEL · 2004 to 2014
$27.1M
TCGA Data Analysis Center at BerkeleyU24CA143799 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI SPEED, TERENCE PAUL, SPELLMAN, PAUL T. · 2009 to 2016
$4.9M
The Role of Fbxw7 in genetic instability and cancerR01CA116481 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MAO, JIAN-HUA · 2008 to 2012
$1.7M
Cancer Research UK 16942Cancer Research UK 9675Medical Research Council MC_UU_12022/10Medical Research Council MR/N501876/1NCI NIH HHS P50 CA058207NCI NIH HHS R01 CA116481NCI NIH HHS U24 CA143799NCI NIH HHS U54 CA112970
6 · The paper itself

Abstract

backgroundHigh mitotic activity is associated with the genesis and progression of many cancers. Small molecule inhibitors of mitotic apparatus proteins are now being developed and evaluated clinically as anticancer agents. With clinical trials of several of these experimental compounds underway, it is important to understand the molecular mechanisms that determine high mitotic activity, identify tumor subtypes that carry molecular aberrations that confer high mitotic activity, and to develop molecular markers that distinguish which tumors will be most responsive to mitotic apparatus inhibitors.

methodsWe identified a coordinately regulated mitotic apparatus network by analyzing gene expression profiles for 53 malignant and non-malignant human breast cancer cell lines and two separate primary breast tumor datasets. We defined the mitotic network activity index (MNAI) as the sum of the transcriptional levels of the 54 coordinately regulated mitotic apparatus genes. The effect of those genes on cell growth was evaluated by small interfering RNA (siRNA).

resultsHigh MNAI was enriched in basal-like breast tumors and was associated with reduced survival duration and preferential sensitivity to inhibitors of the mitotic apparatus proteins, polo-like kinase, centromere associated protein E and aurora kinase designated GSK462364, GSK923295 and GSK1070916, respectively. Co-amplification of regions of chromosomes 8q24, 10p15-p12, 12p13, and 17q24-q25 was associated with the transcriptional upregulation of this network of 54 mitotic apparatus genes, and we identify transcription factors that localize to these regions and putatively regulate mitotic activity. Knockdown of the mitotic network by siRNA identified 22 genes that might be considered as additional therapeutic targets for this clinically relevant patient subgroup.

conclusionsWe define a molecular signature which may guide therapeutic approaches for tumors with high mitotic network activity.

Indexed as

Gene Expression Regulation, NeoplasticAurora KinasesBreast NeoplasmsCell Cycle ProteinsCell Line, TumorCell ProliferationChromosomal Proteins, Non-HistoneFemaleGene AmplificationGene Expression ProfilingGene Regulatory NetworksGenome, HumanHumansKaplan-Meier EstimateMitosisPolo-Like Kinase 1Aurora KinasesCell Cycle Proteinscentromere protein EChromosomal Proteins, Non-HistonePolo-Like Kinase 1Protein Serine-Threonine KinasesProto-Oncogene ProteinsSmall Molecule LibrariesBreast cancerMitotic indexNovel therapeuticsPredictive biomarker

Identifiers

PMID27368372
PMCPMC4930593
OpenAlexW2463686441

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.