Evidence map›Paper›PMID 27366785›Full record

ArticleData in brief2016

Dataset of Arabidopsis plants that overexpress FT driven by a meristem-specific KNAT1 promoter.

L Duplat-Bermúdez, R Ruiz-Medrano, D Landsman, L Mariño-Ramírez, B Xoconostle-Cázares

Open access · goldAbstract read
In one paragraph

Article in Data in brief, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

L Duplat-BermúdezDepartamento de Biotecnología y Bioingeniería; Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional. Av. IPN 2508 San Pedro Zacatenco, 07360 Mexico City, Mexico.
R Ruiz-MedranoDepartamento de Biotecnología y Bioingeniería; Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional. Av. IPN 2508 San Pedro Zacatenco, 07360 Mexico City, Mexico.
D LandsmanComputational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, United States of America, Bethesda, MD, USA.
L Mariño-RamírezComputational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, United States of America, Bethesda, MD, USA.
B Xoconostle-CázaresDepartamento de Biotecnología y Bioingeniería; Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional. Av. IPN 2508 San Pedro Zacatenco, 07360 Mexico City, Mexico.
Center for Research and Advanced Studies of the National Polytechnic Institute · MXNational Institutes of Health · USInstituto Politécnico Nacional · MX

Funding

Genome Assemblies, Analyses, and ComparisonsZIALM082713 · NLM · NATIONAL LIBRARY OF MEDICINE · PI LANDSMAN, DAVID · 2013 to 2025
$3.5M
Intramural NIH HHS Z99 LM999999Intramural NIH HHS ZIA LM082713
6 · The paper itself

Abstract

In this dataset we integrated figures comparing leaf number and rosette diameter in three Arabidopsis FT overexpressor lines (AtFTOE) driven by KNAT1 promoter, "A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis" [5], vs Wild Type (WT) Arabidopsis plats. Also, presented in the tables are some transcriptomic data obtained by RNA-seq Illumina HiSeq from rosette leaves of Arabidopsis plants of AtFTOE 2.1 line vs WT with accession numbers SRR2094583 and SRR2094587 for AtFTOE replicates 1-3 and AtWT for control replicates 1-2 respectively. Raw data of paired-end sequences are located in the public repository of the National Center for Biotechnology Information of the National Library of Medicine, National Institutes of Health, United States of America, Bethesda, MD, USA as Sequence Read Archive (SRA). Performed analyses of differential expression genes are visualized by Mapman and presented in figures. "Transcriptomic analysis of Arabidopsis overexpressing flowering locus T driven by a meristem-specific promoter that induces early flowering" [2], described the interpretation and discussion of the obtained data.

Indexed as

BioinformaticsDifferential expressionFlowering

Identifiers

PMID27366785
PMCPMC4919726
OpenAlexW2419583251

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.