Evidence map›Paper›PMID 27364008›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding.

Idlir Liko, Matteo T Degiacomi, Shabaz Mohammed, Shinya Yoshikawa, Carla Schmidt, Carol V Robinson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Monomer and dimer structures of cytochrome boProtein science : a publication of the Protein Society · 2023
    Article
  4. Interaction of Terminal Oxidases with Amphipathic Molecules.International journal of molecular sciences · 2023
    Review
  5. Structural basis of mammalian complex IV inhibition by steroids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Review
  7. Article
  8. CytochromeCells · 2021
    Review
  9. Article
  10. Review
  11. Review
  12. Review
  13. Characterizing Thermal Transitions of IgG with Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2019
    Article
  14. Monomeric structure of an active form of bovine cytochromeProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Lipid binding attenuates channel closure of the outer membrane protein OmpF.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Idlir LikoDepartment of Chemistry, University of Oxford, Oxford OX1 2JD, United Kingdom;
Matteo T DegiacomiDepartment of Chemistry, University of Oxford, Oxford OX1 2JD, United Kingdom;
Shabaz MohammedDepartment of Chemistry, University of Oxford, Oxford OX1 2JD, United Kingdom; Department of Biochemistry, University of Oxford, Oxford OX1 2JD, United Kingdom;
Shinya YoshikawaPicobiology Institute, Graduate School of Life Science, University of Hyogo, Kamigohri Ako, Hyogo 678-1297, Japan.
Carla SchmidtDepartment of Chemistry, University of Oxford, Oxford OX1 2JD, United Kingdom; carla.schmidt@biochemtech.uni-halle.de carol.robinson@chem.ox.ac.uk.
Carol V RobinsonDepartment of Chemistry, University of Oxford, Oxford OX1 2JD, United Kingdom; carla.schmidt@biochemtech.uni-halle.de carol.robinson@chem.ox.ac.uk.
Science Oxford · GBUniversity of Oxford · GBUniversity of Hyogo · JP

Funding

European Research Council 268851Medical Research Council G1000819Wellcome Trust
6 · The paper itself

Abstract

Bovine cytochrome c oxidase is an integral membrane protein complex comprising 13 protein subunits and associated lipids. Dimerization of the complex has been proposed; however, definitive evidence for the dimer is lacking. We used advanced mass spectrometry methods to investigate the oligomeric state of cytochrome c oxidase and the potential role of lipids and posttranslational modifications in its subunit interfaces. Mass spectrometry of the intact protein complex revealed that both the monomer and the dimer are stabilized by large lipid entities. We identified these lipid species from the purified protein complex, thus implying that they interact specifically with the enzyme. We further identified phosphorylation and acetylation sites of cytochrome c oxidase, located in the peripheral subunits and in the dimer interface, respectively. Comparing our phosphorylation and acetylation sites with those found in previous studies of bovine, mouse, rat, and human cytochrome c oxidase, we found that whereas some acetylation sites within the dimer interface are conserved, suggesting a role for regulation and stabilization of the dimer, phosphorylation sites were less conserved and more transient. Our results therefore provide insights into the locations and interactions of lipids with acetylated residues within the dimer interface of this enzyme, and thereby contribute to a better understanding of its structure in the natural membrane. Moreover dimeric cytochrome c oxidase, comprising 20 transmembrane, six extramembrane subunits, and associated lipids, represents the largest integral membrane protein complex that has been transferred via electrospray intact into the gas phase of a mass spectrometer, representing a significant technological advance.

Indexed as

AcetylationAnimalsCattleElectron Transport Complex IVLipidsMyocardiumProtein MultimerizationProtein Processing, Post-TranslationalProtein SubunitsElectron Transport Complex IVLipidsProtein Subunitscytochrome c oxidaselipidsmass spectrometry

Identifiers

PMID27364008
PMCPMC4961149
OpenAlexW2466303967

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.