ArticleScientific reports2016
Natural variation of root exudates in Arabidopsis thaliana-linking metabolomic and genomic data.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.
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79 citing papers in PubMed, 206 citations in OpenAlex.
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- Aspen-associated soil microbiomes reveal different strategies for nitrogen acquisition across ecosystems in Mexico and Canada.FEMS microbiology ecology · 2026Article
- Geographic and species-specific determinants of rhizosphere microbiome assembly inISME communications · 2026Article
- Heritability of theFrontiers in plant science · 2026Article
- Soil and genotype-driven resource allocation trade-offs shape root exudation across crop species.Plant and soil · 2026Article
- Root-exuded sugars as drivers of rhizosphere microbiome assembly.Plant biotechnology (Tokyo, Japan) · 2025Article
- Significant difference in Miscanthus species root carbon exudation rate.Annals of botany · 2025Article
- The Rice-Microbe Nexus: Unlocking Productivity Through Soil Science.Rice (New York, N.Y.) · 2025Review
- A Brief Overview of the Epigenetic Regulatory Mechanisms in Plants.International journal of molecular sciences · 2025Review
- Natural variation in root exudate composition in the genetically structured Arabidopsis thaliana in the Iberian Peninsula.The New phytologist · 2025Article
- Enhancing the Resilience of Agroecosystems Through Improved Rhizosphere Processes: A Strategic Review.International journal of molecular sciences · 2024Review
- Trade-offs and adaptation to metalliferous soils: The role of soil microbiome in metal tolerance and uptake in Arabidopsis halleri ecotypes from a reciprocal transplant experiment.The Science of the total environment · 2024Article
- Community standards and future opportunities for synthetic communities in plant-microbiota research.Nature microbiology · 2024Review
- Cover crop root exudates impact soil microbiome functional trajectories in agricultural soils.Microbiome · 2024Article
- Genes to specialized metabolites: accumulation of scopoletin, umbelliferone and their glycosides in natural populations of Arabidopsis thaliana.BMC plant biology · 2024Article
- Medicinal Plant Root Exudate Metabolites Shape the Rhizosphere Microbiota.International journal of molecular sciences · 2024Article
- Cover Crop Root Exudates Impact Soil Microbiome Functional Trajectories in Agricultural Soils.Research square · 2024Article
- Unraveling the interplay between root exudates, microbiota, and rhizosheath formation in pearl millet.Microbiome · 2024Article
- Multi-Generation Ecosystem Selection of Rhizosphere Microbial Communities Associated with Plant Genotype and Biomass inMicroorganisms · 2023Article
19 more citing papers are in PubMed but not listed here.
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Many metabolomics studies focus on aboveground parts of the plant, while metabolism within roots and the chemical composition of the rhizosphere, as influenced by exudation, are not deeply investigated. In this study, we analysed exudate metabolic patterns of Arabidopsis thaliana and their variation in genetically diverse accessions. For this project, we used the 19 parental accessions of the Arabidopsis MAGIC collection. Plants were grown in a hydroponic system, their exudates were harvested before bolting and subjected to UPLC/ESI-QTOF-MS analysis. Metabolite profiles were analysed together with the genome sequence information. Our study uncovered distinct metabolite profiles for root exudates of the 19 accessions. Hierarchical clustering revealed similarities in the exudate metabolite profiles, which were partly reflected by the genetic distances. An association of metabolite absence with nonsense mutations was detected for the biosynthetic pathways of an indolic glucosinolate hydrolysis product, a hydroxycinnamic acid amine and a flavonoid triglycoside. Consequently, a direct link between metabolic phenotype and genotype was detected without using segregating populations. Moreover, genomics can help to identify biosynthetic enzymes in metabolomics experiments. Our study elucidates the chemical composition of the rhizosphere and its natural variation in A. thaliana, which is important for the attraction and shaping of microbial communities.
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