Evidence map›Paper›PMID 27363429›Full record

ArticleStatistical methods in medical research2018

Collaborative targeted maximum likelihood estimation for variable importance measure: Illustration for functional outcome prediction in mild traumatic brain injuries.

Romain Pirracchio, John K Yue, Geoffrey T Manley, Mark J van der Laan, Alan E Hubbard, TRACK-TBI Investigators including Wayne A Gordon, Hester F Lingsma, Andrew IR Maas, Pratik Mukherjee, David O Okonkwo, David M Schnyer, Alex B Valadka and Esther L Yuh

Abstract read
In one paragraph

Article in Statistical methods in medical research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Romain Pirracchio1 Department of Anesthesia and Perioperative Care, UCSF, San Francisco General Hospital, San Francisco, CA, USA.
John K Yue2 Brain and Spinal Injury Center, San Francisco, CA, USA.
Geoffrey T Manley2 Brain and Spinal Injury Center, San Francisco, CA, USA.
Mark J van der Laan4 Division of Biostatistics, School of Public Health, University of California Berkeley, Berkeley, CA, USA.
Alan E Hubbard4 Division of Biostatistics, School of Public Health, University of California Berkeley, Berkeley, CA, USA.
TRACK-TBI Investigators including Wayne A Gordon, Hester F Lingsma, Andrew IR Maas, Pratik Mukherjee, David O Okonkwo, David M Schnyer, Alex B Valadka and Esther L Yuh
University of California, Berkeley · USUniversity of California, San Francisco · USSan Francisco General Hospital · US

Funding

Transforming Research and Clinical Knowledge in Traumatic Brain InjuryU01NS086090 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DIAZ-ARRASTIA, RAMON, GIACINO, JOSEPH THOMAS · 2013 to 2017
$19.1M
Transforming Traumatic Brain Injury Research and Clinical CareRC2NS069409 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MANLEY, GEOFFREY T · 2009 to 2011
$4.3M
NINDS NIH HHS RC2 NS069409NINDS NIH HHS U01 NS086090
6 · The paper itself

Abstract

Standard statistical practice used for determining the relative importance of competing causes of disease typically relies on ad hoc methods, often byproducts of machine learning procedures (stepwise regression, random forest, etc.). Causal inference framework and data-adaptive methods may help to tailor parameters to match the clinical question and free one from arbitrary modeling assumptions. Our focus is on implementations of such semiparametric methods for a variable importance measure (VIM). We propose a fully automated procedure for VIM based on collaborative targeted maximum likelihood estimation (cTMLE), a method that optimizes the estimate of an association in the presence of potentially numerous competing causes. We applied the approach to data collected from traumatic brain injury patients, specifically a prospective, observational study including three US Level-1 trauma centers. The primary outcome was a disability score (Glasgow Outcome Scale - Extended (GOSE)) collected three months post-injury. We identified clinically important predictors among a set of risk factors using a variable importance analysis based on targeted maximum likelihood estimators (TMLE) and on cTMLE. Via a parametric bootstrap, we demonstrate that the latter procedure has the potential for robust automated estimation of variable importance measures based upon machine-learning algorithms. The cTMLE estimator was associated with substantially less positivity bias as compared to TMLE and larger coverage of the 95% CI. This study confirms the power of an automated cTMLE procedure that can target model selection via machine learning to estimate VIMs in complicated, high-dimensional data.

Indexed as

Likelihood FunctionsRecovery of FunctionBrain Injuries, TraumaticCooperative BehaviorForecastingGlasgow Outcome ScaleHumansMachine LearningOutcome Assessment, Health Carecausal inferencecollaborative targeted maximum likelihoodhigh-dimensional datapositivitysemi-parametricVariable importance measure

Identifiers

PMID27363429
PMCPMC5589499
OpenAlexW2470688112

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.