Evidence map›Paper›PMID 27362913›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2017

The genetic basis of classic nonketotic hyperglycinemia due to mutations in GLDC and AMT.

Curtis R Coughlin, Michael A Swanson, Kathryn Kronquist, Cécile Acquaviva, Tim Hutchin, Pilar Rodríguez-Pombo, Marja-Leena Väisänen, Elaine Spector, Geralyn Creadon-Swindell, Ana M Brás-Goldberg and 10 more

Erratum issuedOpen access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 98 citations in OpenAlex.

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  11. The precise molecular diagnosis of novelMolecular genetics and metabolism reports · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 5 countries.

Curtis R CoughlinSection of Genetics, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, USA.ORCID 0000-0002-3545-7903
Michael A SwansonSection of Genetics, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, USA.ORCID 0000-0001-8983-5407
Kathryn KronquistSection of Genetics, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, USA.
Cécile AcquavivaService Maladies Héréditaires du Métabolisme, Centre de Biologie Est, CHU de Lyon, Lyon, France.
Tim HutchinNewborn Screening and Biochemical Genetics, Birmingham Children's Hospital, Birmingham, UK.
Pilar Rodríguez-PomboCentro de Diagnóstico de Enfermedades Moleculares (CEDEM), CBM-SO, (UAM-CISC), Centro de Investigación en Red de Enfermedades Raras (CIBERER), IDIPAZ, Universidad Autónoma Madrid, Madrid, Spain.
Marja-Leena VäisänenResearch Group of Cancer Research and Translational Medicine, University of Oulu, Oulu, and Northern Finland Laboratory Centre Nordlab, Oulu, Finland.ORCID 0000-0002-6292-1388
Elaine SpectorSection of Genetics, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, USA.ORCID 0000-0002-4468-8500
Geralyn Creadon-SwindellSection of Genetics, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, USA.
Ana M Brás-GoldbergNewborn Screening and Biochemical Genetics, Birmingham Children's Hospital, Birmingham, UK.ORCID 0000-0002-2413-1721
Elisa RahikkalaPEDEGO Research Unit, Medical Research Center, Department of Clinical Genetics, Oulu University Hospital and University of Oulu, Oulu, Finland.
Jukka S MoilanenPEDEGO Research Unit, Medical Research Center, Department of Clinical Genetics, Oulu University Hospital and University of Oulu, Oulu, Finland.ORCID 0000-0002-8041-3205
Vincent MahieuCenter for Human Genetics, University of Leuven, Leuven, Belgium.
Gert MatthijsCenter for Human Genetics, University of Leuven, Leuven, Belgium.
Irene Bravo-AlonsoCentro de Diagnóstico de Enfermedades Moleculares (CEDEM), CBM-SO, (UAM-CISC), Centro de Investigación en Red de Enfermedades Raras (CIBERER), IDIPAZ, Universidad Autónoma Madrid, Madrid, Spain.ORCID 0000-0001-7300-2515
Celia Pérez-CerdáCentro de Diagnóstico de Enfermedades Moleculares (CEDEM), CBM-SO, (UAM-CISC), Centro de Investigación en Red de Enfermedades Raras (CIBERER), IDIPAZ, Universidad Autónoma Madrid, Madrid, Spain.
Magdalena UgarteCentro de Diagnóstico de Enfermedades Moleculares (CEDEM), CBM-SO, (UAM-CISC), Centro de Investigación en Red de Enfermedades Raras (CIBERER), IDIPAZ, Universidad Autónoma Madrid, Madrid, Spain.
Christine Vianey-SabanService Maladies Héréditaires du Métabolisme, Centre de Biologie Est, CHU de Lyon, Lyon, France.
Gunter H ScharerSection of Genetics, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, USA.
Johan L K Van HoveSection of Genetics, Department of Pediatrics, University of Colorado School of Medicine, Aurora, Colorado, USA.
Centre for Biomedical Network Research on Rare Diseases · ESChildren's Hospital Colorado · USUniversity of Colorado Denver · USBirmingham Children's Hospital · GBKU Leuven · BEOulu University Hospital · FIChildren's Minnesota · USNordLab · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe study's purpose was to delineate the genetic mutations that cause classic nonketotic hyperglycinemia (NKH).

methodsGenetic results, parental phase, ethnic origin, and gender data were collected from subjects suspected to have classic NKH. Mutations were compared with those in the existing literature and to the population frequency from the Exome Aggregation Consortium (ExAC) database.

resultsIn 578 families, genetic analyses identified 410 unique mutations, including 246 novel mutations. 80% of subjects had mutations in GLDC. Missense mutations were noted in 52% of all GLDC alleles, most private. Missense mutations were 1.5 times as likely to be pathogenic in the carboxy terminal of GLDC than in the amino-terminal part. Intragenic copy-number variations (CNVs) in GLDC were noted in 140 subjects, with biallelic CNVs present in 39 subjects. The position and frequency of the breakpoint for CNVs correlated with intron size and presence of Alu elements. Missense mutations, most often recurring, were the most common type of disease-causing mutation in AMT. Sequencing and CNV analysis identified biallelic pathogenic mutations in 98% of subjects. Based on genotype, 15% of subjects had an attenuated phenotype. The frequency of NKH is estimated at 1:76,000.

conclusionThe 484 unique mutations now known in classic NKH provide a valuable overview for the development of genotype-based therapies.Genet Med 19 1, 104-111.

Indexed as

AllelesAminomethyltransferaseDihydrolipoamide DehydrogenaseExonsFemaleGenetic TestingGenotypeGlycineGlycine Decarboxylase ComplexGlycine Dehydrogenase (Decarboxylating)HumansHyperglycinemia, NonketoticIntronsMaleMutation, MissenseAminomethyltransferaseDihydrolipoamide DehydrogenaseGlycineGlycine Decarboxylase ComplexGlycine Dehydrogenase (Decarboxylating)

Identifiers

PMID27362913
OpenAlexW2465825877

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.