Evidence map›Paper›PMID 27362840›Full record

ArticleBiochemistry2016

Stereochemical Consequences of Vinylpyruvate Hydratase-Catalyzed Reactions.

William H Johnson, Tyler M M Stack, Stephanie M Taylor, Elizabeth A Burks, Christian P Whitman

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

William H JohnsonDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and ‡Department of Molecular Biosciences, University of Texas , Austin, Texas 78712, United States.
Tyler M M StackDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and ‡Department of Molecular Biosciences, University of Texas , Austin, Texas 78712, United States.
Stephanie M TaylorDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and ‡Department of Molecular Biosciences, University of Texas , Austin, Texas 78712, United States.
Elizabeth A BurksDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and ‡Department of Molecular Biosciences, University of Texas , Austin, Texas 78712, United States.
Christian P WhitmanDivision of Chemical Biology and Medicinal Chemistry, College of Pharmacy, and ‡Department of Molecular Biosciences, University of Texas , Austin, Texas 78712, United States.
The University of Texas at Austin · US

Funding

ENZYMES OF THE META-FISSION PATHWAYR01GM041239 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI WHITMAN, CHRISTIAN P. · 1995 to 2017
$3.0M
NIGMS NIH HHS R01 GM041239
6 · The paper itself

Abstract

A stereochemical analysis has been carried out on two vinylpyruvate hydratases (VPH), which convert 2-hydroxy-2,4-pentadienoate to 2-keto-4S-hydroxypentanoate in meta-fission pathways. Bacterial strains with this pathway can use aromatic compounds as sole sources of energy and carbon. The analysis was carried out using the 5-methyl and 5-chloro derivatives of 2-hydroxy-2,4-pentadienoate with the enzymes from Pseudomonas putida mt-2 (Pp) and Leptothrix cholodnii SP-6 (Lc). In both organisms, VPH is in a complex with the preceding enzyme in the pathway, 4-oxalocrotonate decarboxylase (4-OD). In D2O, a deuteron is incorporated stereospecifically at the C-3 and C-5 positions of product by both Pp and Lc enzymes. Accordingly, the complexes generate (3S,5S)-3,5-[di-D]-2-keto-4S-hydroxyhexanoate and (3S,5R)-3,5-[di-D]-2-keto-4R-hydroxy-5-chloropentanoate (4R and 5R due to a priority numbering change). The substitution at C-5 (CH3 or Cl) or the source of the enzyme (Pp or Lc) does not change the stereochemical outcome. One mechanism that can account for the results is the ketonization of the 5-substituted dienol to the α,β-unsaturated ketone (placing a deuteron at C-5 in D2O), followed by the conjugate addition of water (placing a deuteron at C-3). The stereochemical outcome for VPH (from Pp and Lc) is the same as that reported for a related enzyme, 2-oxo-hept-4-ene-1,7-dioate hydratase, from Escherichia coli C. The combined observations suggest similar mechanisms for these three enzymes that could possibly be common to this group of enzymes.

Indexed as

Bacterial ProteinsBiocatalysisCarboxy-LyasesEscherichia coliFatty Acids, UnsaturatedHydro-LyasesLeptothrixNuclear Magnetic Resonance, BiomolecularPseudomonas putidaRecombinant ProteinsStereoisomerismSubstrate Specificity2-hydroxy-2,4-pentadienoic acid2-hydroxypentadienoic acid hydratase4-oxalocrotonate decarboxylaseBacterial ProteinsCarboxy-LyasesFatty Acids, UnsaturatedHydro-LyasesRecombinant Proteins

Identifiers

PMID27362840
PMCPMC7254968
OpenAlexW2465087104

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.