Evidence map›Paper›PMID 27362648›Full record

ArticleGenetic testing and molecular biomarkers2016

Association Study Between SLC15A4 Polymorphisms and Haplotypes and Systemic Lupus Erythematosus in a Han Chinese Population.

Mingwang Zhang, Fangru Chen, Dongmei Zhang, Zhifang Zhai, Fei Hao

Open access · hybridAbstract read
In one paragraph

Article in Genetic testing and molecular biomarkers, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Mingwang Zhang1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
Fangru Chen2 Department of Dermatology, Affiliated Hospital of Guilin Medical College , Guilin, China .
Dongmei Zhang1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
Zhifang Zhai1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
Fei Hao1 Department of Dermatology, Southwest Hospital, Third Military Medical University , Chongqing, China .
Southwest Hospital · CNAffiliated Hospital of Guilin Medical College · CNArmy Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThe gene SLC15A4 (solute carrier family 15 [oligopeptide transporter], member 4) has been reported as contributing to the pathogenesis of systemic lupus erythematosus (SLE). We performed a case-control replication study to investigate further the association between single-nucleotide polymorphisms (SNPs) in the SLC15A4 gene and systemic SLE in a Han Chinese population.

methodsIn Han Chinese SLE patients and healthy individuals (n = 355, 375, respectively), 18 SNPs in the SLC15A4 gene were genotyped using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and TaqMan SNP genotyping assays. Analyses of allele frequencies and genotypes using codominant, dominant, and recessive models were conducted, as well as a linkage disequilibrium analysis. P values < 0.05 were considered significant.

resultsAllele frequencies of five of the analyzed SNPs were significantly associated with SLE. Under a codominant model the genotype frequencies of rs3765108 AG and rs7308691 AT were significantly higher in the SLE group than the control group (p = 0.019, 0.049, respectively). Under a dominant model the rs1385374 (TT+CT) SNP carried a higher risk of SLE than (CC) (p = 0.042). One SLC15A4 haplotype (TA), which consists of 2 SNPs (rs959989 and rs983492), was associated with SLE (p = 0.024).

conclusionOur study determined that five SNPs (rs959989, rs1385374, rs983492, rs12298615, and rs10847697) are associated with SLE. Thus, SLC15A4 may be important in the pathogenesis of SLE in Han Chinese patients.

Indexed as

AdultAllelesAsian PeopleCarrier ProteinsCase-Control StudiesChinaEthnicityFemaleGene FrequencyGenetic Predisposition to DiseaseHaplotypesHumansLinkage DisequilibriumLupus Erythematosus, SystemicMaleMembrane Transport ProteinsCarrier ProteinsMembrane Transport ProteinsNerve Tissue ProteinsSLC15A4 protein, human

Identifiers

PMID27362648
PMCPMC4991581
OpenAlexW2471294260

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.