Evidence map›Paper›PMID 27359145›Full record

ArticleJournal of synchrotron radiation2016

Guiding synchrotron X-ray diffraction by multimodal video-rate protein crystal imaging.

Justin A Newman, Shijie Zhang, Shane Z Sullivan, Ximeng Y Dow, Michael Becker, Michael J Sheedlo, Sergey Stepanov, Mark S Carlsen, R Michael Everly, Chittaranjan Das and 2 more

Abstract read
In one paragraph

Article in Journal of synchrotron radiation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Low-doseIUCrJ · 2020
    Article
  4. The complex analysis of X-ray mesh scans for macromolecular crystallography.Acta crystallographica. Section D, Structural biology · 2018
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Justin A NewmanDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Shijie ZhangDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Shane Z SullivanDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Ximeng Y DowDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Michael BeckerGM/CA@APS, X-Ray Science Division, Argonne National Laboratory, Argonne, IL 60439, USA.
Michael J SheedloDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Sergey StepanovGM/CA@APS, X-Ray Science Division, Argonne National Laboratory, Argonne, IL 60439, USA.
Mark S CarlsenDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
R Michael EverlyDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Chittaranjan DasDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.
Robert F FischettiGM/CA@APS, X-Ray Science Division, Argonne National Laboratory, Argonne, IL 60439, USA.
Garth J SimpsonDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN 47906, USA.

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI John Tesmer · 1985 to 2026
$43.4M
Nonlinear Optical Imaging for Guiding Protein Structure DeterminationR01GM103401 · NIGMS · PURDUE UNIVERSITY · PI SIMPSON, GARTH JASON · 2012 to 2018
$1.7M
Ultrafast Nonlinear Optical Approaches toward High-Throughput Membrane Protein NaR01GM103910 · NIGMS · PURDUE UNIVERSITY · PI SIMPSON, GARTH JASON · 2013 to 2016
$1.1M
NCI NIH HHS P30 CA023168NIGMS NIH HHS R01 GM103401NIGMS NIH HHS R01 GM103910
6 · The paper itself

Abstract

Synchronous digitization, in which an optical sensor is probed synchronously with the firing of an ultrafast laser, was integrated into an optical imaging station for macromolecular crystal positioning prior to synchrotron X-ray diffraction. Using the synchronous digitization instrument, second-harmonic generation, two-photon-excited fluorescence and bright field by laser transmittance were all acquired simultaneously with perfect image registry at up to video-rate (15 frames s(-1)). A simple change in the incident wavelength enabled simultaneous imaging by two-photon-excited ultraviolet fluorescence, one-photon-excited visible fluorescence and laser transmittance. Development of an analytical model for the signal-to-noise enhancement afforded by synchronous digitization suggests a 15.6-fold improvement over previous photon-counting techniques. This improvement in turn allowed acquisition on nearly an order of magnitude more pixels than the preceding generation of instrumentation and reductions of well over an order of magnitude in image acquisition times. These improvements have allowed detection of protein crystals on the order of 1 µm in thickness under cryogenic conditions in the beamline. These capabilities are well suited to support serial crystallography of crystals approaching 1 µm or less in dimension.

Indexed as

X-Ray DiffractionCrystallography, X-RayLasersMacromolecular SubstancesProteinsSynchrotronsMacromolecular SubstancesProteinsnonlinear optical microscopyprotein crystalsynchronous digitization

Identifiers

PMID27359145
PMCPMC4928651

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.