Evidence map›Paper›PMID 27358277›Full record

ArticleJournal of the Royal Society, Interface2016

High turnover drives prolonged persistence of influenza in managed pig herds.

Virginia E Pitzer, Ricardo Aguas, Steven Riley, Willie L A Loeffen, James L N Wood, Bryan T Grenfell

Abstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  16. Infectious disease in an era of global change.Nature reviews. Microbiology · 2022
    Review
  17. Zoonotic and reverse zoonotic transmission of viruses between humans and pigs.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Virginia E PitzerDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, Yale University, New Haven, CT 06520, USA Fogarty International Center, National Institutes of Health, Bethesda, MD 20850, USA virginia.pitzer@yale.edu.ORCID 0000-0003-1015-2289
Ricardo AguasMRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College, London SW7 2AZ, UK.
Steven RileyMRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College, London SW7 2AZ, UK.
Willie L A LoeffenDepartment of Virology, Central Veterinary Institute, part of Wageningen UR, Lelystad 8200AB, The Netherlands.
James L N WoodDisease Dynamics Unit, Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.
Bryan T GrenfellFogarty International Center, National Institutes of Health, Bethesda, MD 20850, USA Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.

Funding

Scientific and Technical Computing CoreP2CHD047879 · NICHD · PRINCETON UNIVERSITY · PI MASSEY, DOUGLAS S · 2014 to 2018
$2.0M
Models for synthesising molecular, clinical and epidemiological data, and translaU01GM110721 · NIGMS · IMPERIAL COLLEGE OF SCIENCE, TECHNOLOGY AND MEDICINE · PI CAUCHEMEZ, SIMON, FERGUSON, NEIL MORRIS · 2014 to 2018
$1.9M
BBSRC BB/L001330/1Biotechnology and Biological Sciences Research Council BB/L001330/1Medical Research Council MR/J008761/1NICHD NIH HHS P2C HD047879NIGMS NIH HHS U01 GM110721
6 · The paper itself

Abstract

Pigs have long been hypothesized to play a central role in the emergence of novel human influenza A virus (IAV) strains, by serving as mixing vessels for mammalian and avian variants. However, the key issue of viral persistence in swine populations at different scales is ill understood. We address this gap using epidemiological models calibrated against seroprevalence data from Dutch finishing pigs to estimate the 'critical herd size' (CHS) for IAV persistence. We then examine the viral phylogenetic evidence for persistence by comparing human and swine IAV. Models suggest a CHS of approximately 3000 pigs above which influenza was likely to persist, i.e. orders of magnitude lower than persistence thresholds for IAV and other acute viruses in humans. At national and regional scales, we found much stronger empirical signatures of prolonged persistence of IAV in swine compared with human populations. These striking levels of persistence in small populations are driven by the high recruitment rate of susceptible piglets, and have significant implications for management of swine and for overall patterns of genetic diversity of IAV.

Indexed as

Influenza A virusModels, BiologicalAnimalsOrthomyxoviridae InfectionsSwineSwine Diseasesinfluenzamathematical modellingsurveillanceswinetransmission dynamics

Identifiers

PMID27358277
PMCPMC4938081

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.