Evidence map›Paper›PMID 27357660›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Borrowed alleles and convergence in serpentine adaptation.

Brian J Arnold, Brett Lahner, Jeffrey M DaCosta, Caroline M Weisman, Jesse D Hollister, David E Salt, Kirsten Bomblies, Levi Yant

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
52.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 187 citations in OpenAlex.

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  19. Local cryptic diversity in salinity adaptation mechanisms in the wild outcrossingProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Brian J ArnoldDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA 02115;
Brett LahnerDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907;
Jeffrey M DaCostaDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;
Caroline M WeismanDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138;
Jesse D HollisterDepartment of Ecology and Evolution, Stony Brook University, Stony Brook, NY 11794-5245;
David E SaltDepartment of Horticulture and Landscape Architecture, Purdue University, West Lafayette, IN 47907; Institute of Biological and Environmental Science, University of Aberdeen, Aberdeen, Scotland AB24 3UU, United Kingdom;
Kirsten BombliesDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, United Kingdom.
Levi YantDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138; Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, United Kingdom levi.yant@jic.ac.uk.
Harvard University · USJohn Innes Centre · GBNorwich Research Park · GBPurdue University West Lafayette · USStony Brook University · USUniversity of Aberdeen · GB

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
The Genetic Basis of Natural Ionomic VariationR01GM078536 · NIGMS · PURDUE UNIVERSITY · PI GUERINOT, MARY LOU · 2007 to 2014
$2.6M
Genome wide views of chromatin occupancy in the control of Aquilegia developmentF32GM096699 · NIGMS · HARVARD UNIVERSITY · PI YANT, LEVI · 2011 to 2013
$155k
NIGMS NIH HHS F32 GM096699NIGMS NIH HHS R01 GM078536NIGMS NIH HHS T32 GM008313
6 · The paper itself

Abstract

Serpentine barrens represent extreme hazards for plant colonists. These sites are characterized by high porosity leading to drought, lack of essential mineral nutrients, and phytotoxic levels of metals. Nevertheless, nature forged populations adapted to these challenges. Here, we use a population-based evolutionary genomic approach coupled with elemental profiling to assess how autotetraploid Arabidopsis arenosa adapted to a multichallenge serpentine habitat in the Austrian Alps. We first demonstrate that serpentine-adapted plants exhibit dramatically altered elemental accumulation levels in common conditions, and then resequence 24 autotetraploid individuals from three populations to perform a genome scan. We find evidence for highly localized selective sweeps that point to a polygenic, multitrait basis for serpentine adaptation. Comparing our results to a previous study of independent serpentine colonizations in the closely related diploid Arabidopsis lyrata in the United Kingdom and United States, we find the highest levels of differentiation in 11 of the same loci, providing candidate alleles for mediating convergent evolution. This overlap between independent colonizations in different species suggests that a limited number of evolutionary strategies are suited to overcome the multiple challenges of serpentine adaptation. Interestingly, we detect footprints of selection in A. arenosa in the context of substantial gene flow from nearby off-serpentine populations of A. arenosa, as well as from A. lyrata In several cases, quantitative tests of introgression indicate that some alleles exhibiting strong selective sweep signatures appear to have been introgressed from A. lyrata This finding suggests that migrant alleles may have facilitated adaptation of A. arenosa to this multihazard environment.

Indexed as

Adaptation, PhysiologicalAllelesArabidopsisFlowersGenome, PlantSoilSoiladaptationgene flowplantpopulation genomics

Identifiers

PMID27357660
PMCPMC4961121
OpenAlexW2473791485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.