Evidence map›Paper›PMID 27356881›Full record

ArticleScientific reports2016

Proteome analysis of the Mycobacterium tuberculosis Beijing B0/W148 cluster.

Julia Bespyatykh, Egor Shitikov, Ivan Butenko, Ilya Altukhov, Dmitry Alexeev, Igor Mokrousov, Marine Dogonadze, Viacheslav Zhuravlev, Peter Yablonsky, Elena Ilina and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Metabolic Changes ofPathogens (Basel, Switzerland) · 2020
    Article
  6. Lineage-Specific Proteomic Signatures in theFrontiers in microbiology · 2020
    Article
  7. Article
  8. Circulation ofPathogens and global health · 2019
    Review
  9. Cure of tuberculosis using nanotechnology: An overview.Journal of microbiology (Seoul, Korea) · 2018
    Review
  10. Review
  11. Article
  12. Comparative Proteomic Analysis ofFrontiers in microbiology · 2017
    Article
  13. Article
  14. Comparative Proteomics Analysis of Human Macrophages Infected with VirulentFrontiers in cellular and infection microbiology · 2017
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Julia BespyatykhFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation.
Egor ShitikovFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation.
Ivan ButenkoFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation.
Ilya AltukhovFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation.
Dmitry AlexeevFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation.
Igor MokrousovSt. Petersburg Pasteur Institute, St. Petersburg, Russian Federation.
Marine DogonadzeResearch Institute of Phtisiopulmonology, St. Petersburg, Russian Federation.
Viacheslav ZhuravlevResearch Institute of Phtisiopulmonology, St. Petersburg, Russian Federation.
Peter YablonskyResearch Institute of Phtisiopulmonology, St. Petersburg, Russian Federation.
Elena IlinaFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation.
Vadim GovorunFederal Research and Clinical Centre of Physical-Chemical Medicine, Moscow, Russian Federation.
Research Institute of Physical Chemical Medicine · RUSaint-Petersburg Research Institute of Phthisiopulmonology · RUMoscow Institute of Physics and Technology · RUSaint Petersburg Pasteur Institute · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Beijing B0/W148, a "successful" clone of Mycobacterium tuberculosis, is widespread in the Russian Federation and some countries of the former Soviet Union. Here, we used label-free gel-LC-MS/MS shotgun proteomics to discover features of Beijing B0/W148 strains that could explain their success. Qualitative and quantitative proteome analyses of Beijing B0/W148 strains allowed us to identify 1,868 proteins, including 266 that were differentially abundant compared with the control strain H37Rv. To predict the biological effects of the observed differences in protein abundances, we performed Gene Ontology analysis together with analysis of protein-DNA interactions using a gene regulatory network. Our results demonstrate that Beijing B0/W148 strains have increased levels of enzymes responsible for long-chain fatty acid biosynthesis, along with a coincident decrease in the abundance of proteins responsible for their degradation. Together with high levels of HsaA (Rv3570c) protein, involved in steroid degradation, these findings provide a possible explanation for the increased transmissibility of Beijing B0/W148 strains and their survival in host macrophages. Among other, we confirmed a very low level of the SseA (Rv3283) protein in Beijing B0/W148 characteristic for all «modern» Beijing strains, which could lead to increased DNA oxidative damage, accumulation of mutations, and potentially facilitate the development of drug resistance.

Indexed as

Bacterial ProteinsChromatography, LiquidGene OntologyGene Regulatory NetworksMycobacterium tuberculosisProteomeTandem Mass SpectrometryVirulence FactorsBacterial ProteinsProteomeVirulence Factors

Identifiers

PMID27356881
PMCPMC4928086
OpenAlexW2473352304

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.