Evidence map›Paper›PMID 27355376›Full record

ArticlePLoS genetics2016

A Chemical-Genomic Screen of Neglected Antibiotics Reveals Illicit Transport of Kasugamycin and Blasticidin S.

Anthony L Shiver, Hendrik Osadnik, George Kritikos, Bo Li, Nevan Krogan, Athanasios Typas, Carol A Gross

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 49 citations in OpenAlex.

  1. The phenotypic landscape of the model firmicuteProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. The Evolution of ABC Importers.Journal of molecular biology · 2025
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Gene Expression Profiling ofFrontiers in microbiology · 2021
    Article
  18. Article
  19. ATP-binding cassette (ABC) import systems ofEmerging microbes & infections · 2020
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Anthony L ShiverGraduate Group in Biophysics, University of California, San Francisco, San Francisco, California, United States of America.
Hendrik OsadnikDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, California, United States of America.ORCID 0000-0002-1624-1322
George KritikosEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
Bo LiDepartment of Chemistry, University of North Carolina-Chapel Hill, Chapel Hill, North Carolina, United States of America.
Nevan KroganQB3, California Institute for Quantitative Biosciences, San Francisco, California, United States of America.
Athanasios TypasEuropean Molecular Biology Laboratory, Genome Biology Unit, Heidelberg, Germany.
Carol A GrossDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, California, United States of America.ORCID 0000-0002-5595-9732
European Molecular Biology Laboratory · DEQB3 · USUniversity of California, San Francisco · USUniversity of North Carolina at Chapel Hill · US

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008284 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KORTEMME, TANJA · 1988 to 2022
$10.1M
Cellular homeostasis pathways in bacteriaR35GM118061 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GROSS, CAROL ANNE · 2016 to 2025
$9.0M
MUTATIONAL ANALYSIS OF E COLI CORE RNA POLYMERASER01GM057755 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GROSS, CAROL ANNE · 1998 to 2013
$6.2M
Gene Function and Pathway Analysis Using Systems Level Approaches in ProkaryotesR01GM102790 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GROSS, CAROL ANNE · 2012 to 2015
$1.8M
Dithiolopyrrolone Antibiotics: Biosynthesis, Mode of Action and Cellular FunctionR00GM099904 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LI, BO · 2013 to 2015
$745k
NIGMS NIH HHS R00 GM099904NIGMS NIH HHS R01 GM057755NIGMS NIH HHS R01 GM102790NIGMS NIH HHS R35 GM118061NIGMS NIH HHS T32 GM008284
6 · The paper itself

Abstract

Fighting antibiotic resistance requires a deeper understanding of the genetic factors that determine the antibiotic susceptibility of bacteria. Here we describe a chemical-genomic screen in Escherichia coli K-12 that was designed to discover new aspects of antibiotic resistance by focusing on a set of 26 antibiotics and other stresses with poorly characterized mode-of-action and determinants of resistance. We show that the screen identifies new resistance determinants for these antibiotics including a common signature from two antimicrobials, kasugamycin and blasticidin S, used to treat crop diseases like rice blast and fire blight. Following this signature, we further investigated the mechanistic basis for susceptibility to kasugamycin and blasticidin S in E. coli using both genetic and biochemical approaches. We provide evidence that these compounds hijack an overlapping set of peptide ABC-importers to enter the bacterial cell. Loss of uptake may be an underappreciated mechanism for the development of kasugamycin resistance in bacterial plant pathogens.

Indexed as

AminoglycosidesAnti-Bacterial AgentsCrops, AgriculturalDrug Resistance, MicrobialEscherichia coli K12GenomicsNucleosidesPlant DiseasesPlantsAminoglycosidesAnti-Bacterial Agentsblasticidin SkasugamycinNucleosides

Identifiers

PMID27355376
PMCPMC4927156
OpenAlexW2470678698

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.