Evidence map›Paper›PMID 27353049›Full record

ArticleAIDS research and human retroviruses2016

HIV-1 Sequence Data Coverage in Central East Africa from 1959 to 2013.

Susanna L Lamers, Andrew E Barbier, Oliver Ratmann, Christophe Fraser, Rebecca Rose, Oliver Laeyendecker, Mary K Grabowski

Abstract read
In one paragraph

Article in AIDS research and human retroviruses, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Susanna L Lamers1 Bioinfoexperts, LLC , Thibodaux, Louisiana.
Andrew E Barbier1 Bioinfoexperts, LLC , Thibodaux, Louisiana.
Oliver Ratmann2 Medical Research Council Centre for Outbreak Analysis and Modeling, Department of Infectious Disease Epidemiology, Imperial College London , London, United Kingdom .
Christophe Fraser2 Medical Research Council Centre for Outbreak Analysis and Modeling, Department of Infectious Disease Epidemiology, Imperial College London , London, United Kingdom .
Rebecca Rose1 Bioinfoexperts, LLC , Thibodaux, Louisiana.
Oliver Laeyendecker3 National Institute of Allergy and Infectious Diseases, National Institutes of Health , Baltimore, Maryland.
Mary K Grabowski5 Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University , Baltimore, Maryland.

Funding

International Studies of the Acquired Immune Deficiency Syndrome (AIDS)ZIAAI000361 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI REDD, ANDREW · 2009 to 2025
$15.8M
Medical Research Council MR/K010174/1
6 · The paper itself

Abstract

Central and Eastern African HIV sequence data have been most critical in understanding the establishment and evolution of the global HIV pandemic. Here we report on the extent of publicly available HIV genetic sequence data in the Los Alamos National Laboratory Sequence Database sampled from 1959 to 2013 from six African countries: Uganda, Kenya, Tanzania, Burundi, the Democratic Republic of Congo, and Rwanda. We have summarized these data, including HIV subtypes, the years sampled, and the genomic regions sequenced. We also provide curated alignments for this important geographic area in five HIV genomic regions with substantial coverage.

Indexed as

GenotypeAfrica, CentralAfrica, EasternFemaleHIV-1HIV InfectionsHumansMaleMolecular EpidemiologyPregnancySequence Analysis, DNA

Identifiers

PMID27353049
PMCPMC5028903

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.