ArticleDatabase : the journal of biological databases and curation2016
SorghumFDB: sorghum functional genomics database with multidimensional network analysis.
Article in Database : the journal of biological databases and curation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 61 citations in OpenAlex.
- Biotechnological and genetic innovations to enhance sorghum adaptation under climate change.Frontiers in plant science · 2026Review
- Article
- Genomic resources, opportunities, and prospects for accelerated improvement of millets.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- Review
- Characterization and Transcriptomic Analysis of Sorghum EIN/EIL Family and Identification of Their Roles in Internode Maturation.Plants (Basel, Switzerland) · 2024Article
- MDSi: Multi-omics Database for Setaria italica.BMC plant biology · 2023Article
- GelFAP v2.0: an improved platform for Gene functional analysis in Gastrodia elata.BMC genomics · 2023Article
- Light response of gametophyte inFrontiers in plant science · 2023Article
- Amaranth Genomic Resource Database: an integrated database resource of Amaranth genes and genomics.Frontiers in plant science · 2023Article
- Recent advancements in the breeding of sorghum crop: current status and future strategies for marker-assisted breeding.Frontiers in genetics · 2023Review
- Genetic mapping of sorghum resistance to an Illinois isolate of Colletotrichum sublineola.The plant genome · 2022Article
- Gene Co-Expression Network Tools and Databases for Crop Improvement.Plants (Basel, Switzerland) · 2022Review
- Review
- Dissection of canopy layer-specific genetic control of leaf angle in Sorghum bicolor by RNA sequencing.BMC genomics · 2022Article
- Progress and challenges in sorghum biotechnology, a multipurpose feedstock for the bioeconomy.Journal of experimental botany · 2022Review
- PlantGSAD: a comprehensive gene set annotation database for plant species.Nucleic acids research · 2022Article
- Identification, characterization, and expression profiling of the putativeFrontiers in microbiology · 2022Article
- SorGSD: updating and expanding the sorghum genome science database with new contents and tools.Biotechnology for biofuels · 2021Article
- Sorghum's Whole-Plant Transcriptome and Proteome Responses to Drought Stress: A Review.Life (Basel, Switzerland) · 2021Review
- Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sorghum (Sorghum bicolor [L.] Moench) has excellent agronomic traits and biological properties, such as heat and drought-tolerance. It is a C4 grass and potential bioenergy-producing plant, which makes it an important crop worldwide. With the sorghum genome sequence released, it is essential to establish a sorghum functional genomics data mining platform. We collected genomic data and some functional annotations to construct a sorghum functional genomics database (SorghumFDB). SorghumFDB integrated knowledge of sorghum gene family classifications (transcription regulators/factors, carbohydrate-active enzymes, protein kinases, ubiquitins, cytochrome P450, monolignol biosynthesis related enzymes, R-genes and organelle-genes), detailed gene annotations, miRNA and target gene information, orthologous pairs in the model plants Arabidopsis, rice and maize, gene loci conversions and a genome browser. We further constructed a dynamic network of multidimensional biological relationships, comprised of the co-expression data, protein-protein interactions and miRNA-target pairs. We took effective measures to combine the network, gene set enrichment and motif analyses to determine the key regulators that participate in related metabolic pathways, such as the lignin pathway, which is a major biological process in bioenergy-producing plants.Database URL: http://structuralbiology.cau.edu.cn/sorghum/index.html.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.