Evidence map›Paper›PMID 27351973›Full record

ArticlePLoS pathogens2016

Two Escape Mechanisms of Influenza A Virus to a Broadly Neutralizing Stalk-Binding Antibody.

Ning Chai, Lee R Swem, Mike Reichelt, Haiyin Chen-Harris, Elizabeth Luis, Summer Park, Ashley Fouts, Patrick Lupardus, Thomas D Wu, Olga Li and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 91 citations in OpenAlex.

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  20. Epistasis reduces fitness costs of influenza A virus escape from stem-binding antibodies.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Ning ChaiInfectious Diseases Department, Genentech, South San Francisco, California, United States of America.
Lee R SwemInfectious Diseases Department, Genentech, South San Francisco, California, United States of America.
Mike ReicheltPathology Department, Genentech, South San Francisco, California, United States of America.
Haiyin Chen-HarrisBioinformatics & Computational Biology Department, Genentech, South San Francisco, California, United States of America.
Elizabeth LuisProtein Chemistry Department, Genentech, South San Francisco, California, United States of America.
Summer ParkTranslational Immunology Department, Genentech, South San Francisco, California, United States of America.
Ashley FoutsInfectious Diseases Department, Genentech, South San Francisco, California, United States of America.
Patrick LupardusStructural Biology Department, Genentech, South San Francisco, California, United States of America.
Thomas D WuBioinformatics & Computational Biology Department, Genentech, South San Francisco, California, United States of America.
Olga LiDevelopment Sciences Department, Genentech, South San Francisco, California, United States of America.
Jacqueline McBrideDevelopment Sciences Department, Genentech, South San Francisco, California, United States of America.
Michael LawrenceBioinformatics & Computational Biology Department, Genentech, South San Francisco, California, United States of America.
Min XuTranslational Immunology Department, Genentech, South San Francisco, California, United States of America.
Man-Wah TanInfectious Diseases Department, Genentech, South San Francisco, California, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Broadly neutralizing antibodies targeting the stalk region of influenza A virus (IAV) hemagglutinin (HA) are effective in blocking virus infection both in vitro and in vivo. The highly conserved epitopes recognized by these antibodies are critical for the membrane fusion function of HA and therefore less likely to be permissive for virus mutational escape. Here we report three resistant viruses of the A/Perth/16/2009 strain that were selected in the presence of a broadly neutralizing stalk-binding antibody. The three resistant viruses harbor three different mutations in the HA stalk: (1) Gln387Lys; (2) Asp391Tyr; (3) Asp391Gly. The Gln387Lys mutation completely abolishes binding of the antibody to the HA stalk epitope. The other two mutations, Asp391Tyr and Asp391Gly, do not affect antibody binding at neutral pH and only slightly reduce binding at low pH. Interestingly, they enhance the fusion ability of the HA, representing a novel mechanism that allows productive membrane fusion even in the presence of antibody and hence virus escape from antibody neutralization. Therefore, these mutations illustrate two different resistance mechanisms used by IAV to escape broadly neutralizing stalk-binding antibodies. Compared to the wild type virus, the resistant viruses release fewer progeny viral particles during replication and are more sensitive to Tamiflu, suggesting reduced viral fitness.

Indexed as

AnimalsAntibodies, NeutralizingAntibodies, ViralBlotting, WesternDogsDrug Resistance, MicrobialFlow CytometryHemagglutinin Glycoproteins, Influenza VirusHumansImmune EvasionImmunohistochemistryInfluenza A virusInfluenza, HumanMadin Darby Canine Kidney CellsMiceNeutralization TestsAntibodies, NeutralizingAntibodies, ViralHemagglutinin Glycoproteins, Influenza Virus

Identifiers

PMID27351973
PMCPMC4924800
OpenAlexW2472379502

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.