Evidence map›Paper›PMID 27349637›Full record

ArticleBMC microbiology2016

Shigella flexneri serotype 1c derived from serotype 1a by acquisition of gtrIC gene cluster via a bacteriophage.

Swee-Seong Tang, Nils I A Carlin, Kaisar A Talukder, Phung D Cam, Naresh K Verma

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Applied and environmental microbiology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

Swee-Seong TangDivision of Biomedical Science and Biochemistry, Research School of Biology, The Australian National University, Bldg #134 Linnaeus Way, Canberra, ACT 0200, Australia. sstang@um.edu.my.ORCID 0000-0002-6996-441X
Nils I A CarlinEtvax AB, Gunnar Asplunds Allé 16, SE-171 63, Solna, Stockholm, Sweden.
Kaisar A TalukderInternational Centre for Diarrhoeal Diseases Research, Dhaka, Bangladesh.
Phung D CamDepartment of Microbiology, National Institute of Hygiene and Epidemiology, Hanoi, Vietnam.
Naresh K VermaDivision of Biomedical Science and Biochemistry, Research School of Biology, The Australian National University, Bldg #134 Linnaeus Way, Canberra, ACT 0200, Australia.
Australian National University · AUInternational Centre for Diarrhoeal Disease Research · BDNational Institute Of Hygiene And Epidemiology · VN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundShigella spp. are the primary causative agents of bacillary dysentery. Since its emergence in the late 1980s, the S. flexneri serotype 1c remains poorly understood, particularly with regard to its origin and genetic evolution. This article provides a molecular insight into this novel serotype and the gtrIC gene cluster that determines its unique immune recognition.

resultsA PCR of the gtrIC cluster showed that serotype 1c isolates from different geographical origins were genetically conserved. An analysis of sequences flanking the gtrIC cluster revealed remnants of a prophage genome, in particular integrase and tRNA(Pro) genes. Meanwhile, Southern blot analyses on serotype 1c, 1a and 1b strains indicated that all the tested serotype 1c strains may have had a common origin that has since remained distinct from the closely related 1a and 1b serotypes. The identification of prophage genes upstream of the gtrIC cluster is consistent with the notion of bacteriophage-mediated integration of the gtrIC cluster into a pre-existing serotype.

conclusionsThis is the first study to show that serotype 1c isolates from different geographical origins share an identical pattern of genetic arrangement, suggesting that serotype 1c strains may have originated from a single parental strain. Analysis of the sequence around the gtrIC cluster revealed a new site for the integration of the serotype converting phages of S. flexneri. Understanding the origin of new pathogenic serotypes and the molecular basis of serotype conversion in S. flexneri would provide information for developing cross-reactive Shigella vaccines.

Indexed as

SerogroupBacterial Typing TechniquesBacteriophagesBase SequenceBlotting, SouthernDNA, BacterialDysentery, BacillaryEvolution, MolecularGenome, ViralGlucosyltransferasesMultigene FamilyO AntigensPolymerase Chain ReactionProphagesRNA, TransferSequence AnalysisDNA, BacterialGlucosyltransferasesO AntigensRNA, TransferBacillary dysenteryEvolutionary originGlucosyltransferaseSerotype 1cSerotype-conversionShigella flexneri

Identifiers

PMID27349637
PMCPMC4924310
OpenAlexW2470390757

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.