Evidence map›Paper›PMID 27348859›Full record

ArticlePloS one2016

Chronic Rhinosinusitis Patients Show Accumulation of Genetic Variants in PARS2.

Viktor Henmyr, Christina Lind-Halldén, Christer Halldén, Torbjörn Säll, Daniel Carlberg, Claus Bachert, Lars-Olaf Cardell

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Viktor HenmyrBiomedicine, Kristianstad University, Kristianstad, Sweden.
Christina Lind-HalldénBiomedicine, Kristianstad University, Kristianstad, Sweden.
Christer HalldénBiomedicine, Kristianstad University, Kristianstad, Sweden.
Torbjörn SällDepartment of Biology, Lund University, Lund, Sweden.
Daniel CarlbergBiomedicine, Kristianstad University, Kristianstad, Sweden.
Claus BachertUpper Airways Research Laboratory, University Hospital Ghent, Ghent, Belgium.
Lars-Olaf CardellDivision of ENT Diseases, CLINTEC, Karolinska Institutet, Huddinge, Sweden.
Kristianstad University · SEKarolinska Institutet · SELund University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic studies of chronic rhinosinusitis (CRS) have identified a total of 53 CRS-associated SNPs that were subsequently evaluated for their reproducibility in a recent study. The rs2873551 SNP in linkage disequilibrium with PARS2 showed the strongest association signal. The present study aims to comprehensively screen for rare variants in PARS2 and evaluate for accumulation of such variants in CRS-patients. Sanger sequencing and long-range PCR were used to screen for rare variants in the putative promoter region and coding sequence of 310 CRS-patients and a total of 21 variants were detected. The mutation spectrum was then compared with data from European populations of the 1000Genomes project (EUR) and the Exome Aggregation Consortium (ExAC). The CRS population showed a significant surplus of low-frequency variants compared with ExAC data. Haplotype analysis of the region showed a significant excess of rare haplotypes in the CRS population compared to the EUR population. Two missense mutations were also genotyped in the 310 CRS patients and 372 CRS-negative controls, but no associations with the disease were found. This is the first re-sequencing study in CRS research and also the first study to show an association of rare variants with the disease.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationAdultAgedAllelesAmino Acyl-tRNA SynthetasesChronic DiseaseFemaleGene FrequencyGenetic Association StudiesGenotypeHaplotypesHumansMaleMiddle AgedOpen Reading FramesAmino Acyl-tRNA Synthetasesprolyl T RNA synthetase

Identifiers

PMID27348859
PMCPMC4922623
OpenAlexW2465867727

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.