Evidence map›Paper›PMID 27348850›Full record

ArticleBiomaterials2016

N-terminal specific conjugation of extracellular matrix proteins to 2-pyridinecarboxaldehyde functionalized polyacrylamide hydrogels.

Jessica P Lee, Elena Kassianidou, James I MacDonald, Matthew B Francis, Sanjay Kumar

Abstract read
In one paragraph

Article in Biomaterials, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

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  11. Transcriptomic analysis reveals that BMP4 sensitizes glioblastoma tumor-initiating cells to mechanical cues.Matrix biology : journal of the International Society for Matrix Biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jessica P LeeDepartment of Chemistry, University of California, Berkeley, CA 94720, USA; Department of Bioengineering, University of California, Berkeley, CA 94720, USA.
Elena KassianidouDepartment of Bioengineering, University of California, Berkeley, CA 94720, USA; UC Berkeley-UCSF Graduate Program in Bioengineering, Berkeley, CA 94720, USA.
James I MacDonaldDepartment of Chemistry, University of California, Berkeley, CA 94720, USA.
Matthew B FrancisDepartment of Chemistry, University of California, Berkeley, CA 94720, USA; Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Sanjay KumarDepartment of Bioengineering, University of California, Berkeley, CA 94720, USA; UC Berkeley-UCSF Graduate Program in Bioengineering, Berkeley, CA 94720, USA; Department of Chemical and Biomolecular Engineering, University of California, Berkeley CA 94720, USA. Electronic address: skumar@berkeley.edu.
University of California, Berkeley · USLawrence Berkeley National Laboratory · US

Funding

Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
Mechanisms of Neural Stem Cell MechanoregulationR01NS074831 · NINDS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Sanjay Kumar, DAVID V SCHAFFER · 2012 to 2026
$5.9M
Molecular analysis of physical microenvironmental control of tumor cell invasionR21CA174573 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2014 to 2016
$655k
Genetic strategies for the quantitative control of cell-matrix mechanobiologyR21EB016359 · NIBIB · UNIVERSITY OF CALIFORNIA BERKELEY · PI KUMAR, SANJAY · 2013 to 2014
$425k
Howard Hughes Medical InstituteNCI NIH HHS R21 CA174573NIBIB NIH HHS R21 EB016359NIGMS NIH HHS T32 GM066698NINDS NIH HHS R01 NS074831
6 · The paper itself

Abstract

Polyacrylamide hydrogels have been used extensively to study cell responses to the mechanical and biochemical properties of extracellular matrix substrates. A key step in fabricating these substrates is the conjugation of cell adhesion proteins to the polyacrylamide surfaces, which typically involves nonspecifically anchoring these proteins via side-chain functional groups. This can result in a loss of presentation control and altered bioactivity. Here, we describe a new functionalization strategy in which we anchor full-length extracellular matrix proteins to polyacrylamide substrates using 2-pyridinecarboxaldehyde, which can be co-polymerized into polyacrylamide gels and used to immobilize proteins by their N-termini. This one-step reaction proceeds under mild aqueous conditions and does not require additional reagents. We demonstrate that these substrates can readily conjugate to various extracellular matrix proteins, as well as promote cell adhesion and spreading. Notably, this chemistry supports the assembly and cellular remodeling of large collagen fibers, which is not observed using conventional side-chain amine-conjugation chemistry.

Indexed as

Acrylic ResinsAnimalsBiocompatible MaterialsCattleCell AdhesionCell LineCollagenExtracellular Matrix ProteinsHardnessHumansMechanical PhenomenaMicePyridinesAcrylic ResinsBiocompatible MaterialsCollagenExtracellular Matrix Proteinspolyacrylamide gelspyridinecarboxaldehydePyridines

Identifiers

PMID27348850
PMCPMC4939314
OpenAlexW2423132708

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.