Evidence map›Paper›PMID 27348585›Full record

ArticleThe Journal of clinical investigation2016

The nonsense-mediated RNA decay pathway is disrupted in inflammatory myofibroblastic tumors.

JingWei Lu, Terra-Dawn Plank, Fang Su, XiuJuan Shi, Chen Liu, Yuan Ji, ShuaiJun Li, Andrew Huynh, Chao Shi, Bo Zhu and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  4. Nonsense-mediated mRNA decay: friend or foe in cancer biology?Cell communication and signaling : CCS · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

JingWei Lu
Terra-Dawn Plank
Fang Su
XiuJuan Shi
Chen Liu
Yuan Ji
ShuaiJun Li
Andrew Huynh
Chao Shi
Bo Zhu
Guang Yang
YanMing Wu
Miles F Wilkinson
YanJun Lu
Tongji University · CNCenter for Genomic Science · ITHangzhou Normal University · CNThe First Affiliated Hospital, Sun Yat-sen University · CN

Funding

TRAINING IN REPRODUCTIVE SCIENCEST32HD007203 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PAMELA L MELLON · 1988 to 2026
$4.8M
The Role of NMD in Olfactory NeurogenesisR01GM111838 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WILKINSON, MILES FROME · 2014 to 2017
$1.6M
The role of the nonsense mediated RNA decay pathway in regulating cell fateF32GM113487 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BRANNAN, TERRA-DAWN PLANK · 2015 to 2016
$109k
NICHD NIH HHS T32 HD007203NIGMS NIH HHS F32 GM113487NIGMS NIH HHS R01 GM111838
6 · The paper itself

Abstract

Inflammatory myofibroblastic tumors (IMTs) are characterized by myofibroblast proliferation and an inflammatory cell infiltrate. Little is known about the molecular pathways that precipitate IMT formation. Here, we report the identification of somatic mutations in UPF1, a gene that encodes an essential component of the nonsense-mediated RNA decay (NMD) pathway, in 13 of 15 pulmonary IMT samples. The majority of mutations occurred in a specific region of UPF1 and triggered UPF1 alternative splicing. Several mRNA targets of the NMD pathway were upregulated in IMT samples, indicating that the UPF1 mutations led to reduced NMD magnitude. These upregulated NMD targets included NIK mRNA, which encodes a potent activator of NF-κB. In human lung cells, UPF1 depletion increased expression of chemokine-encoding genes in a NIK-dependent manner. Elevated chemokines and IgE class switching events were observed in IMT samples, consistent with NIK upregulation in these tumors. Together, these results support a model in which UPF1 mutations downregulate NMD, leading to NIK-dependent NF-κB induction, which contributes to the immune infiltration that is characteristic of IMTs. The molecular link between the NMD pathway and IMTs has implications for the diagnosis and treatment of these tumors.

Indexed as

Nonsense Mediated mRNA DecayAdultAgedAlternative SplicingCell ProliferationChemokinesDown-RegulationFemaleGene Expression RegulationHumansImmunoglobulin EInflammationLung NeoplasmsMaleMiddle AgedMutationChemokinesImmunoglobulin ERent1 protein, mouseRNA, MessengerTrans-Activators

Identifiers

PMID27348585
PMCPMC4966300
OpenAlexW2466619342

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.