ArticlePloS one2016
RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.
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Who cites it
12 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-analysis identifies pleiotropic loci controlling phenotypic trade-offs in sorghum.Genetics · 2021Pooled it
- Genetic Relatedness and Heterotic Grouping in MRIZP Elite Maize Inbred Lines Using SNP Markers from 25k SNP Array and RNA-seq Data.Current issues in molecular biology · 2026Article
- A novel active transposon creates allelic variation through altered translation rate to influence protein abundance.Nucleic acids research · 2023Article
- Genetic and molecular dissection of ginseng (Frontiers in plant science · 2023Article
- Recruitment of an ancient branching program to suppress carpel development in maize flowers.Proceedings of the National Academy of Sciences of the United States of America · 2022Article
- Understanding Omics Driven Plant Improvement andFrontiers in genetics · 2021Review
- Maize Introgression Library Provides Evidence for the Involvement ofG3 (Bethesda, Md.) · 2020Article
- Identification of a Major QTL and Candidate Gene Analysis of Salt Tolerance at the Bud Burst Stage in Rice (Oryza sativa L.) Using QTL-Seq and RNA-Seq.Rice (New York, N.Y.) · 2020Article
- Article
- Haplotype structure in commercial maize breeding programs in relation to key founder lines.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Bulked-Segregant Analysis Coupled to Whole Genome Sequencing (BSA-Seq) for Rapid Gene Cloning in Maize.G3 (Bethesda, Md.) · 2018Article
- Differentially Regulated Orthologs in Sorghum and the Subgenomes of Maize.The Plant cell · 2017Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent reports have shown than many identically named genetic lines used in research around the world actually contain large amounts of uncharacterized genetic variation as a result of cross contamination of stocks, unintentional crossing, residual heterozygosity within original stocks, or de novo mutation. 27 public, large scale, RNA-seq datasets from 20 independent research groups around the world were used to assess variation within the maize (Zea mays ssp. mays) inbred B73, a four decade old variety which served as the reference genotype for the original maize genome sequencing project and is widely used in genetic, genomic, and phenotypic research. Several clearly distinct clades were identified among putatively B73 samples. A number of these clades were defined by the presence of clearly defined genomic blocks containing a haplotype which did not match the published B73 reference genome. The overall proportion of the maize genotype where multiple distinct haplotypes were observed across different research groups was approximately 2.3%. In some cases the relationship among B73 samples generated by different research groups recapitulated mentor/mentee relationships within the maize genetics community.
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