Evidence map›Paper›PMID 27348298›Full record

ArticleNature genetics2016

Population genomics studies identify signatures of global dispersal and drug resistance in Plasmodium vivax.

Daniel N Hupalo, Zunping Luo, Alexandre Melnikov, Patrick L Sutton, Peter Rogov, Ananias Escalante, Andrés F Vallejo, Sócrates Herrera, Myriam Arévalo-Herrera, Qi Fan and 26 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 145 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
145citing papers in PubMed, 1 pooled it
23.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

145 citing papers in PubMed, 1 synthesis or guideline pooled it, 232 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Genomic Insights Into Host Shifts BetweenEvolutionary applications · 2026
    Article
  9. Article
  10. Article
  11. Population Dynamics ofMicroorganisms · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Parasitology · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Mediterranean journal of hematology and infectious diseases · 2025
    Article
  20. Article

85 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

36 authors at 19 institutions in 11 countries.

Daniel N HupaloCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.
Zunping LuoCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.
Alexandre MelnikovBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Patrick L SuttonCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.
Peter RogovBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Ananias EscalanteInstitute for Genomics and Evolutionary Medicine, Department of Biology, Temple University, Philadelphia, Pennsylvania, USA.
Andrés F VallejoCaucaseco Scientific Research Center, Cali, Colombia.
Sócrates HerreraCaucaseco Scientific Research Center, Cali, Colombia.
Myriam Arévalo-HerreraCaucaseco Scientific Research Center, Cali, Colombia.
Qi FanDalian Institute of Biotechnology, Dalian, Liaoning, China.
Ying WangThird Military Medical University, Shapingba, Chongqing, China.
Liwang CuiDepartment of Entomology, Pennsylvania State University, University Park, Pennsylvania, USA.
Carmen M LucasUS Naval Medical Research Unit No. 6, Callao, Peru.
Salomon DurandUS Naval Medical Research Unit No. 6, Callao, Peru.
Juan F SanchezUS Naval Medical Research Unit No. 6, Callao, Peru.
G Christian BaldevianoUS Naval Medical Research Unit No. 6, Callao, Peru.
Andres G LescanoUS Naval Medical Research Unit No. 6, Callao, Peru.
Moses LamanPapua New Guinea Institute of Medical Research, Madang, Papua, New Guinea.
Celine BarnadasVector Borne Diseases Unit, Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea.
Alyssa BarryDivision of Population Health and Immunity, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Ivo MuellerDivision of Population Health and Immunity, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
James W KazuraCenter for Global Health and Diseases, Case Western Reserve University, Cleveland, Ohio, USA.
Alex EapenNational Institute of Malaria Research Field Unit, Indian Council of Medical Research, National Institute of Epidemiology Campus, Chennai, Tamil Nadu, India.
Deena KanagarajNational Institute of Malaria Research Field Unit, Indian Council of Medical Research, National Institute of Epidemiology Campus, Chennai, Tamil Nadu, India.
Neena ValechaNational Institute of Malaria Research, Indian Council of Medical Research, New Delhi, India.
Marcelo U FerreiraDepartment of Parasitology, Institute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Wanlapa RoobsoongMahidol Vivax Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Wang NguitragoolDepartment of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Jetsumon SattabonkotMahidol Vivax Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Dionicia GamboaInstituto de Medicine Tropical Alexander von Humboldt, Universidad Peruana Cayetano Heredia, Lima, Peru.
Margaret KosekDepartment of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, USA.
Joseph M VinetzInstituto de Medicine Tropical Alexander von Humboldt, Universidad Peruana Cayetano Heredia, Lima, Peru.
Lilia González-CerónRegional Centre for Research in Public Health, National Institute for Public Health, Tapachula, Chiapas, México.
Bruce W BirrenBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Daniel E NeafseyBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Jane M CarltonCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.
Naval Medical Research Unit Six · PEBroad Institute · USNew York University · USCaucaseco Scientific Research Center · COIndian Council of Medical Research · INMahidol University · THPapua New Guinea Institute of Medical Research · PGArmy Medical University · CNBarcelona Institute for Global Health · ESCenter for Global Health · USJohns Hopkins University · USMahidol Oxford Tropical Medicine Research Unit · THNational Institute of Public Health · KHPennsylvania State University · USTemple University · USUniversidade de São Paulo · BRUniversidad Peruana Cayetano Heredia · PEUniversity of California, San Diego · USWalter and Eliza Hall Institute of Medical Research · AU

Funding

Southeast Asia Malaria Research CenterU19AI089672 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI CUI, LIWANG · 2010 to 2023
$28.9M
Using Next-Generation Genomics to Study Antimalarial Drug Resistance in IndiaU19AI089676 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARLTON, JANE M · 2010 to 2023
$22.6M
Sugar-feeding behavior of the malaria vector Nyssorhynchus darlingi and development of effective attractive toxic sugar baits (ATSB) to increase intervention success in PeruU19AI089681 · NIAID · YALE UNIVERSITY · PI GAZZINELLI, RICARDO TOSTES · 2010 to 2023
$20.1M
Vector Biology Research and Integrated Vector Management For Malaria ControlU19AI089702 · NIAID · CAUCASECO SCIENTIFIC RESEARCH CENTER · PI HERRERA VALENCIA, SOCRATES · 2010 to 2016
$11.5M
TransmissionU19AI089686 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ZIMMERMAN, PETER A. · 2010 to 2016
$9.9M
INFECTIOUS DISEASES &BASIC MICROBIOLOGICAL MECHANISMST32AI007180 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 1985 to 2022
$8.9M
Peru Infectious Diseases Epidemiology Research Training ConsortiumD43TW007393 · FIC · UNIVERSIDAD PERUANA CAYETANO HEREDIA · PI Andres G Lescano · 2005 to 2026
$5.9M
Translational Research Development for Endemic Infectious Diseases of AmazoniaD43TW007120 · FIC · YALE UNIVERSITY · PI VINETZ, JOSEPH M. · 2004 to 2020
$3.0M
Patient-Oriented Research in Tropical Infectious DiseasesK24AI068903 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VINETZ, JOSEPH M. · 2006 to 2015
$1.5M
FIC NIH HHS D43 TW007120FIC NIH HHS D43 TW007393NIAID NIH HHS HHSN272200900018CNIAID NIH HHS K24 AI068903NIAID NIH HHS T32 AI007180NIAID NIH HHS U19 AI089672NIAID NIH HHS U19 AI089676NIAID NIH HHS U19 AI089681NIAID NIH HHS U19 AI089686NIAID NIH HHS U19 AI089702
6 · The paper itself

Abstract

Plasmodium vivax is a major public health burden, responsible for the majority of malaria infections outside Africa. We explored the impact of demographic history and selective pressures on the P. vivax genome by sequencing 182 clinical isolates sampled from 11 countries across the globe, using hybrid selection to overcome human DNA contamination. We confirmed previous reports of high genomic diversity in P. vivax relative to the more virulent Plasmodium falciparum species; regional populations of P. vivax exhibited greater diversity than the global P. falciparum population, indicating a large and/or stable population. Signals of natural selection suggest that P. vivax is evolving in response to antimalarial drugs and is adapting to regional differences in the human host and the mosquito vector. These findings underline the variable epidemiology of this parasite species and highlight the breadth of approaches that may be required to eliminate P. vivax globally.

Indexed as

AntimalarialsDrug ResistanceGenetic MarkersHumansMalaria, VivaxMetagenomicsPlasmodium vivaxSelection, GeneticTranscriptomeAntimalarialsGenetic Markers

Identifiers

PMID27348298
PMCPMC5347536
OpenAlexW2467177598

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.