Evidence map›Paper›PMID 27346849›Full record

ArticleScientific reports2016

Histone modifications and p53 binding poise the p21 promoter for activation in human embryonic stem cells.

Yoko Itahana, Jinqiu Zhang, Jonathan Göke, Leah A Vardy, Rachel Han, Kozue Iwamoto, Engin Cukuroglu, Paul Robson, Mahmoud A Pouladi, Alan Colman and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Tau Stabilizes Chromatin Compaction.Frontiers in cell and developmental biology · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Emerging Roles of p53 Family Members in Glucose Metabolism.International journal of molecular sciences · 2018
    Review
  13. Ceramide Signaling and p53 Pathways.Advances in cancer research · 2018
    Review
  14. Review
  15. Review
  16. Emerging Non-Canonical Functions and Regulation by p53: p53 and Stemness.International journal of molecular sciences · 2016
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yoko ItahanaCancer &Stem Cell Biology Program, Duke-NUS Medical School, 8 College Road, 169857 Singapore.
Jinqiu ZhangStem Cell Disease Models A*STAR Institute of Medical Biology, 8A Biomedical Grove, Immunos, 138648 Singapore.
Jonathan GökeComputational &Systems Biology Genome Building, 138672 Singapore.
Leah A VardyTranslational Regulation in Stem Cells, A*STAR Institute of Medical Biology, 8A Biomedical Grove, Immunos, 138648 Singapore.
Rachel HanCancer &Stem Cell Biology Program, Duke-NUS Medical School, 8 College Road, 169857 Singapore.
Kozue IwamotoCancer &Stem Cell Biology Program, Duke-NUS Medical School, 8 College Road, 169857 Singapore.
Engin CukurogluComputational &Systems Biology Genome Building, 138672 Singapore.
Paul RobsonStem Cell and Regenerative Biology, Genome Institute of Singapore, 60 Biopolis Street, Genome Building, 138672 Singapore.
Mahmoud A PouladiTranslational Laboratory in Genetic Medicine, A*STAR, 8A Biomedical Grove, Immunos, 138648 Singapore.
Alan ColmanStem Cell Disease Models A*STAR Institute of Medical Biology, 8A Biomedical Grove, Immunos, 138648 Singapore.
Koji ItahanaCancer &Stem Cell Biology Program, Duke-NUS Medical School, 8 College Road, 169857 Singapore.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The high proliferation rate of embryonic stem cells (ESCs) is thought to arise partly from very low expression of p21. However, how p21 is suppressed in ESCs has been unclear. We found that p53 binds to the p21 promoter in human ESCs (hESCs) as efficiently as in differentiated human mesenchymal stem cells, however it does not promote p21 transcription in hESCs. We observed an enrichment for both the repressive histone H3K27me3 and activating histone H3K4me3 chromatin marks at the p21 locus in hESCs, suggesting it is a suppressed, bivalent domain which overrides activation by p53. Reducing H3K27me3 methylation in hESCs rescued p21 expression, and ectopic expression of p21 in hESCs triggered their differentiation. Further, we uncovered a subset of bivalent promoters bound by p53 in hESCs that are similarly induced upon differentiation in a p53-dependent manner, whereas p53 promotes the transcription of other target genes which do not show an enrichment of H3K27me3 in ESCs. Our studies reveal a unique epigenetic strategy used by ESCs to poise undesired p53 target genes, thus balancing the maintenance of pluripotency in the undifferentiated state with a robust response to differentiation signals, while utilizing p53 activity to maintain genomic stability and homeostasis in ESCs.

Indexed as

Base SequenceCell DifferentiationCell LineCyclin-Dependent Kinase Inhibitor p21Epigenesis, GeneticFluorescent Antibody Technique, IndirectHistonesHuman Embryonic Stem CellsHumansInduced Pluripotent Stem CellsMethylationPromoter Regions, GeneticProtein BindingProtein StabilityRNA InterferenceRNA, Small InterferingCyclin-Dependent Kinase Inhibitor p21HistonesRNA, Small InterferingTumor Suppressor Protein p53

Identifiers

PMID27346849
PMCPMC4921813

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.