ArticleJournal of biomedical informatics2016
A unified software framework for deriving, visualizing, and exploring abstraction networks for ontologies.
Article in Journal of biomedical informatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Big knowledge visualization of the COVID-19 CIDO ontology evolution.BMC medical informatics and decision making · 2023Article
- Usability and Recall Evaluation of Virtual Reality Ontology Object Manipulation (VROOM) System.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2023Article
- A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.Journal of biomedical semantics · 2022Article
- Visual comprehension and orientation into the COVID-19 CIDO ontology.Journal of biomedical informatics · 2021Article
- Outlier concepts auditing methodology for a large family of biomedical ontologies.BMC medical informatics and decision making · 2020Article
- Missing lateral relationships in top-level concepts of an ontology.BMC medical informatics and decision making · 2020Article
- Web-based Interactive Visualization of Non-Lattice Subgraphs (WINS) in SNOMED CT.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2020Article
- Beginnings of Artificial Intelligence in Medicine (AIM): Computational Artifice Assisting Scientific Inquiry and Clinical Art - with Reflections on Present AIM Challenges.Yearbook of medical informatics · 2019Article
- "OPTImAL": an ontology for patient adherence modeling in physical activity domain.BMC medical informatics and decision making · 2019Article
- Training a Convolutional Neural Network with Terminology Summarization Data Improves SNOMED CT Enrichment.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2019Article
- Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies.Journal of biomedical informatics · 2018Article
- Assessing the practice of biomedical ontology evaluation: Gaps and opportunities.Journal of biomedical informatics · 2018Review
- Overlapping Complex Concepts Have More Commission Errors, Especially in Intensive Terminology Auditing.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2018Article
- Quality assurance of chemical ingredient classification for the National Drug File - Reference Terminology.Journal of biomedical informatics · 2017Article
- An empirical analysis of ontology reuse in BioPortal.Journal of biomedical informatics · 2017Article
- From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies.Artificial intelligence in medicine · 2017Article
- Analyzing structural changes in SNOMED CT's Bacterial infectious diseases using a visual semantic delta.Journal of biomedical informatics · 2017Article
- Introducing the Big Knowledge to Use (BK2U) challenge.Annals of the New York Academy of Sciences · 2017Review
- Taxonomy-Based Approaches to Quality Assurance of Ontologies.Journal of healthcare engineering · 2017Article
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4 authors.
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Abstract
Software tools play a critical role in the development and maintenance of biomedical ontologies. One important task that is difficult without software tools is ontology quality assurance. In previous work, we have introduced different kinds of abstraction networks to provide a theoretical foundation for ontology quality assurance tools. Abstraction networks summarize the structure and content of ontologies. One kind of abstraction network that we have used repeatedly to support ontology quality assurance is the partial-area taxonomy. It summarizes structurally and semantically similar concepts within an ontology. However, the use of partial-area taxonomies was ad hoc and not generalizable. In this paper, we describe the Ontology Abstraction Framework (OAF), a unified framework and software system for deriving, visualizing, and exploring partial-area taxonomy abstraction networks. The OAF includes support for various ontology representations (e.g., OWL and SNOMED CT's relational format). A Protégé plugin for deriving "live partial-area taxonomies" is demonstrated.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.