Evidence map›Paper›PMID 27345427›Full record

ArticleJournal of neuroscience methods2016

Micro-computed tomography in murine models of cerebral cavernous malformations as a paradigm for brain disease.

Romuald Girard, Hussein A Zeineddine, Courtney Orsbon, Huan Tan, Thomas Moore, Nick Hobson, Robert Shenkar, Rhonda Lightle, Changbin Shi, Maged D Fam and 10 more

Open access · greenAbstract readValidation Study
In one paragraph

Article in Journal of neuroscience methods, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

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  17. Phenotypic characterization of murine models of cerebral cavernous malformations.Laboratory investigation; a journal of technical methods and pathology · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 1 country.

Romuald GirardNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Hussein A ZeineddineNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Courtney OrsbonDepartment of Organismal Biology and Anatomy, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Huan TanNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Thomas MooreNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Nick HobsonNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Robert ShenkarNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Rhonda LightleNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Changbin ShiNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Maged D FamNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Ying CaoNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Le ShenNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA; Department of Pathology, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
April I NeanderDepartment of Organismal Biology and Anatomy, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Autumn RorrerMolecular Genetics and Microbiology Department, Duke University Medical Center, Durham, NC, USA.
Carol GallioneMolecular Genetics and Microbiology Department, Duke University Medical Center, Durham, NC, USA.
Alan T TangDepartment of Medicine and Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA, USA.
Mark L KahnDepartment of Medicine and Cardiovascular Institute, University of Pennsylvania, Philadelphia, PA, USA.
Douglas A MarchukMolecular Genetics and Microbiology Department, Duke University Medical Center, Durham, NC, USA.
Zhe-Xi LuoDepartment of Organismal Biology and Anatomy, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA.
Issam A AwadNeurovascular Surgery Program, Section of Neurosurgery, The University of Chicago Medicine and Biological Sciences, Chicago, IL, USA. Electronic address: iawad@uchicago.edu.
University of Chicago · USDuke Medical Center · USUniversity of Pennsylvania · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI MARK W. LINGEN · 1985 to 2026
$122.1M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
HEMATOLOGY CLINICAL RESEARCH TRAINING PROGRAMT32HL007439 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI LAWRENCE F BRASS, PETER S KLEIN · 1985 to 2026
$17.1M
Ruth L. Kirschstein National Research Service Award (NRSA) Institutional Research Training Grant (Parent T32)T32HD007009 · NICHD · UNIVERSITY OF CHICAGO · PI NANCY B SCHWARTZ · 1985 to 2026
$13.0M
Somatic mutation(s) and cellular changes in CCM pathogenesisP01NS092521 · NINDS · DUKE UNIVERSITY · PI KAHN, MARK L · 2015 to 2024
$12.9M
Heg-CCM Signaling in Cardiovascular Development and DiseaseR01HL094326 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI KAHN, MARK L · 2009 to 2018
$3.5M
Development of BA-1049 for treatment of cerebral cavernous malformationR44NS095420 · NINDS · BIOAXONE BIOSCIENCES, INC. · PI AWAD, ISSAM A, MARCHUK, DOUGLAS A. · 2016 to 2017
$3.3M
TLR4 and the microbiome in CCM diseaseR01NS100949 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI KAHN, MARK L · 2017 to 2021
$2.8M
NCATS NIH HHS UL1 TR000430NCI NIH HHS P30 CA014599NHLBI NIH HHS R01 HL094326NHLBI NIH HHS T32 HL007439NICHD NIH HHS T32 HD007009NINDS NIH HHS P01 NS092521NINDS NIH HHS R01 NS100949NINDS NIH HHS R44 NS095420
6 · The paper itself

Abstract

backgroundCerebral cavernous malformations (CCMs) are hemorrhagic brain lesions, where murine models allow major mechanistic discoveries, ushering genetic manipulations and preclinical assessment of therapies. Histology for lesion counting and morphometry is essential yet tedious and time consuming. We herein describe the application and validations of X-ray micro-computed tomography (micro-CT), a non-destructive technique allowing three-dimensional CCM lesion count and volumetric measurements, in transgenic murine brains. NEW

methodWe hereby describe a new contrast soaking technique not previously applied to murine models of CCM disease. Volumetric segmentation and image processing paradigm allowed for histologic correlations and quantitative validations not previously reported with the micro-CT technique in brain vascular disease.

resultsTwenty-two hyper-dense areas on micro-CT images, identified as CCM lesions, were matched by histology. The inter-rater reliability analysis showed strong consistency in the CCM lesion identification and staging (K=0.89, p<0.0001) between the two techniques. Micro-CT revealed a 29% greater CCM lesion detection efficiency, and 80% improved time efficiency. COMPARISON WITH EXISTING

methodSerial integrated lesional area by histology showed a strong positive correlation with micro-CT estimated volume (r(2)=0.84, p<0.0001).

conclusionsMicro-CT allows high throughput assessment of lesion count and volume in pre-clinical murine models of CCM. This approach complements histology with improved accuracy and efficiency, and can be applied for lesion burden assessment in other brain diseases.

Indexed as

Disease Models, AnimalAnimalsApoptosis Regulatory ProteinsBrainContrast MediaFemaleHemangioma, Cavernous, Central Nervous SystemHistological TechniquesIntracellular Signaling Peptides and ProteinsIodineMaleMiceMice, TransgenicObserver VariationOrgan SizeReproducibility of ResultsApoptosis Regulatory ProteinsContrast MediaIntracellular Signaling Peptides and ProteinsIodinePDCD10 protein, mouserho-Associated KinasesRock1 protein, mouseRock2 protein, mouseCerebral cavernous malformationIodine contrastMicro-CTMorphometry

Identifiers

PMID27345427
PMCPMC5003657
OpenAlexW2462582496

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.